Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g079700.1.1 | Tomato | nucleus | 93.81 | 88.7 |
| PGSC0003DMT400076726 | Potato | nucleus | 87.17 | 87.17 |
| CDY65526 | Canola | cytosol | 52.21 | 74.68 |
| PGSC0003DMT400007618 | Potato | nucleus | 68.14 | 71.96 |
| VIT_08s0007g05390.t01 | Wine grape | nucleus | 66.37 | 68.81 |
| PGSC0003DMT400007977 | Potato | nucleus | 48.67 | 67.48 |
| GSMUA_Achr3P08680_001 | Banana | cytosol | 55.31 | 66.14 |
| GSMUA_Achr11P... | Banana | nucleus | 53.1 | 64.86 |
| GSMUA_Achr5P08230_001 | Banana | nucleus | 54.42 | 63.73 |
| GSMUA_AchrUn_... | Banana | nucleus | 56.19 | 63.5 |
| CDX79942 | Canola | nucleus | 60.18 | 63.26 |
| CDY23856 | Canola | nucleus | 60.18 | 63.26 |
| Bra004615.1-P | Field mustard | nucleus | 59.29 | 62.62 |
| CDY35419 | Canola | nucleus | 59.73 | 62.5 |
| Bra000224.1-P | Field mustard | nucleus | 59.73 | 62.5 |
| CDY06142 | Canola | cytosol | 65.04 | 62.29 |
| Os12t0139400-01 | Rice | nucleus | 55.31 | 62.19 |
| CDY06934 | Canola | cytosol | 61.06 | 62.16 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 61.06 | 62.16 |
| Bra007295.1-P | Field mustard | cytosol | 64.6 | 61.86 |
| Bra016943.1-P | Field mustard | cytosol | 60.62 | 61.71 |
| CDX76036 | Canola | nucleus | 61.06 | 61.33 |
| KRH66808 | Soybean | nucleus | 67.26 | 61.29 |
| KRG95133 | Soybean | nucleus | 66.37 | 60.98 |
| AT2G41310.1 | Thale cress | nucleus | 60.62 | 60.89 |
| CDX72077 | Canola | cytosol | 63.27 | 60.85 |
| CDY22518 | Canola | nucleus | 58.41 | 60.83 |
| GSMUA_Achr11P... | Banana | nucleus | 48.67 | 60.77 |
| AT3G57040.1 | Thale cress | nucleus | 62.83 | 60.68 |
| Os11t0143300-02 | Rice | cytosol | 55.31 | 60.1 |
| CDY30966 | Canola | cytosol | 61.5 | 59.91 |
| Bra003265.1-P | Field mustard | cytosol | 63.27 | 59.58 |
| Bra014649.1-P | Field mustard | nucleus | 61.5 | 59.4 |
| CDX67674 | Canola | cytosol | 61.5 | 59.4 |
| KXG27703 | Sorghum | nucleus | 51.77 | 57.92 |
| TraesCS4B01G178900.1 | Wheat | cytosol | 34.96 | 56.03 |
| PGSC0003DMT400042922 | Potato | cytosol | 34.96 | 53.38 |
| TraesCS5B01G132900.2 | Wheat | cytosol | 53.54 | 52.16 |
| TraesCS5A01G131600.2 | Wheat | nucleus | 54.87 | 52.1 |
| TraesCS5D01G140200.1 | Wheat | nucleus | 53.1 | 51.95 |
| Zm00001d011849_P002 | Maize | cytosol | 53.54 | 51.93 |
| AT2G07440.1 | Thale cress | cytosol | 30.97 | 51.47 |
| Os01t0952500-01 | Rice | cytosol | 52.65 | 51.29 |
| Zm00001d023242_P001 | Maize | nucleus | 31.42 | 51.08 |
| PGSC0003DMT400070964 | Potato | cytosol, nucleus, plastid | 34.96 | 50.64 |
| EES02064 | Sorghum | cytosol | 53.98 | 49.8 |
| HORVU5Hr1G043090.1 | Barley | nucleus | 52.65 | 48.77 |
| TraesCS3B01G548600.1 | Wheat | cytosol | 50.0 | 47.08 |
| Zm00001d052476_P001 | Maize | nucleus | 25.22 | 46.72 |
| HORVU3Hr1G108540.2 | Barley | nucleus | 50.0 | 45.56 |
| KXG22820 | Sorghum | endoplasmic reticulum | 53.54 | 43.37 |
| PGSC0003DMT400063187 | Potato | cytosol | 38.05 | 43.0 |
| TraesCS3D01G494600.1 | Wheat | nucleus | 49.12 | 41.26 |
| GSMUA_Achr8P09640_001 | Banana | cytosol | 30.53 | 39.2 |
| PGSC0003DMT400058306 | Potato | nucleus | 42.92 | 39.11 |
Protein Annotations
| EntrezGene:102601166 | MapMan:11.4.2.5 | Gene3D:3.40.50.2300 | InterPro:CheY-like_superfamily | GO:GO:0000160 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| InterPro:IPR001789 | UniProt:M1CXC9 | PFAM:PF00072 | EnsemblPlantsGene:PGSC0003DMG400029852 | PGSC:PGSC0003DMG400029852 | EnsemblPlants:PGSC0003DMT400076758 |
| PFscan:PS50110 | PANTHER:PTHR43874 | PANTHER:PTHR43874:SF26 | SMART:SM00448 | SUPFAM:SSF52172 | InterPro:Sig_transdc_resp-reg_receiver |
| UniParc:UPI000294A2F6 | RefSeq:XP_006351276.1 | : | : | : | : |
Description
Type-a response regulator [Source:PGSC_GENE;Acc:PGSC0003DMG400029852]
Coordinates
chr10:-:58094144..58096645
Molecular Weight (calculated)
25629.5 Da
IEP (calculated)
4.895
GRAVY (calculated)
-0.620
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMAAADLQF HVLAVDDSLI DRKLIERLFK ISSCQVTTVD SGSKALEFLG LQEEHDEQNH PCVSPSNQQE VEINLIITDY CMPGMTGYDL LKKIKESASL
101: RNIPVVIMSS ENVPSRISRC LEEGAEEFFL KPVRLSDVNK LKPHMMKTKC KSPKQQQQPE IIVTQDNQES IDITYVVPPE ENQESDNTLQ QQKLQDNSNN
201: NNKRKAIEEN LSPDRTRQRL SSLTTV
101: RNIPVVIMSS ENVPSRISRC LEEGAEEFFL KPVRLSDVNK LKPHMMKTKC KSPKQQQQPE IIVTQDNQES IDITYVVPPE ENQESDNTLQ QQKLQDNSNN
201: NNKRKAIEEN LSPDRTRQRL SSLTTV
001: MGMAAESQFH VLAVDDSLFD RKLIERLLQK SSCQVTTVDS GSKALEFLGL RQSTDSNDPN AFSKAPVNHQ VVEVNLIITD YCMPGMTGYD LLKKVKESSA
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV
Arabidopsis Description
ARR9Two-component response regulator ARR9 [Source:UniProtKB/Swiss-Prot;Acc:O80366]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.