Factsheet for VIT_08s0007g05390.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g02210.t01
VIT_05s0062g01170.t01
VIT_07s0031g02780.t01
VIT_07s0104g00880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G41310.1	VIT_05s0020g02210.t01	AT3G21510.1	16965536
AT2G41310.1	VIT_05s0020g02210.t01	AT3G21510.1	18642946
AT2G41310.1	VIT_07s0104g00880.t01	AT3G29350.1	16965536
AT3G57040.1	VIT_05s0062g01170.t01	AT1G16970.1	18642946
AT3G57040.1	VIT_05s0020g02210.t01	AT3G21510.1	10930573
AT3G57040.1	VIT_05s0020g02210.t01	AT3G21510.1	16965536
AT3G57040.1	VIT_07s0104g00880.t01	AT3G29350.1	10930573
AT3G57040.1	VIT_07s0104g00880.t01	AT3G29350.1	16965536
AT3G57040.1	VIT_07s0104g00880.t01	AT3G29350.1	18642946
AT3G57040.1	VIT_07s0104g00880.t01	AT3G29350.1	21798944
AT3G57040.1	VIT_07s0031g02780.t01	AT5G08720.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0067g03480.t01	Wine grape	cytosol	44.04	78.05
VIT_13s0067g03450.t01	Wine grape	cytosol	48.62	75.71
VIT_13s0067g03490.t01	Wine grape	nucleus	50.46	75.34
CDY65526	Canola	cytosol	51.83	71.52
GSMUA_Achr3P08680_001	Banana	cytosol	59.17	68.25
GSMUA_Achr11P...	Banana	nucleus	56.88	67.03
PGSC0003DMT400076758	Potato	nucleus	68.81	66.37
GSMUA_Achr5P08230_001	Banana	nucleus	58.72	66.32
Solyc10g079600.1.1	Tomato	nucleus	68.35	65.64
GSMUA_AchrUn_...	Banana	nucleus	60.09	65.5
KRH66808	Soybean	nucleus	74.31	65.32
PGSC0003DMT400076726	Potato	nucleus	67.43	65.04
KRG95133	Soybean	nucleus	73.39	65.04
VIT_13s0067g03460.t01	Wine grape	nucleus	48.62	65.03
VIT_13s0067g03430.t01	Wine grape	nucleus	64.68	64.09
GSMUA_Achr11P...	Banana	nucleus	52.75	63.54
PGSC0003DMT400007618	Potato	nucleus	61.01	62.15
Solyc10g079700.1.1	Tomato	nucleus	67.89	61.92
CDX79942	Canola	nucleus	61.01	61.86
Bra004615.1-P	Field mustard	nucleus	60.55	61.68
Os12t0139400-01	Rice	nucleus	56.42	61.19
CDY23856	Canola	nucleus	60.09	60.93
KXG27703	Sorghum	nucleus	55.05	59.41
VIT_13s0067g03510.t01	Wine grape	nucleus	53.67	59.39
Os11t0143300-02	Rice	cytosol	56.42	59.13
CDX76036	Canola	nucleus	61.01	59.11
TraesCS4B01G178900.1	Wheat	cytosol	38.07	58.87
CDY35419	Canola	nucleus	57.8	58.33
Bra000224.1-P	Field mustard	nucleus	57.8	58.33
AT3G57040.1	Thale cress	nucleus	62.39	58.12
Bra014649.1-P	Field mustard	nucleus	61.93	57.69
CDY14761	Canola	cytoskeleton, cytosol, nucleus	58.72	57.66
AT2G41310.1	Thale cress	nucleus	59.17	57.33
CDX67674	Canola	cytosol	61.47	57.27
CDY22518	Canola	nucleus	56.88	57.14
CDY30966	Canola	cytosol	60.55	56.9
CDY06934	Canola	cytosol	57.8	56.76
Bra007295.1-P	Field mustard	cytosol	61.01	56.36
Bra016943.1-P	Field mustard	cytosol	57.34	56.31
Bra003265.1-P	Field mustard	cytosol	61.93	56.25
CDY06142	Canola	cytosol	60.55	55.93
CDX72077	Canola	cytosol	60.09	55.74
VIT_13s0067g03070.t01	Wine grape	cytosol	38.99	55.56
Os01t0952500-01	Rice	cytosol	57.34	53.88
Zm00001d011849_P002	Maize	cytosol	56.88	53.22
TraesCS5B01G132900.2	Wheat	cytosol	53.67	50.43
Zm00001d023242_P001	Maize	nucleus	32.11	50.36
TraesCS5D01G140200.1	Wheat	nucleus	53.21	50.22
EES02064	Sorghum	cytosol	56.42	50.2
TraesCS5A01G131600.2	Wheat	nucleus	54.13	49.58
TraesCS3B01G548600.1	Wheat	cytosol	54.13	49.17
HORVU5Hr1G043090.1	Barley	nucleus	54.59	48.77
HORVU3Hr1G108540.2	Barley	nucleus	55.05	48.39
Zm00001d052476_P001	Maize	nucleus	26.15	46.72
AT2G07440.1	Thale cress	cytosol	27.52	44.12
VIT_18s0001g02540.t01	Wine grape	nucleus	46.33	43.53
TraesCS3D01G494600.1	Wheat	nucleus	53.21	43.12
KXG22820	Sorghum	endoplasmic reticulum	55.05	43.01
VIT_01s0026g00940.t01	Wine grape	nucleus	43.58	42.99
GSMUA_Achr8P09640_001	Banana	cytosol	34.4	42.61
VIT_17s0000g07580.t01	Wine grape	cytosol, nucleus, plastid	42.2	35.66

Protein Annotations

EntrezGene:100243627	wikigene:100243627	MapMan:11.4.2.5	Gene3D:3.40.50.2300	ProteinID:CCB55319	ProteinID:CCB55319.1
InterPro:CheY-like_superfamily	ncoils:Coil	UniProt:F6HK97	EMBL:FN595991	GO:GO:0000160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
InterPro:IPR001789	EntrezGene:LOC100243627	wikigene:LOC100243627	PFAM:PF00072	PFscan:PS50110	PANTHER:PTHR43874
PANTHER:PTHR43874:SF26	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI00015CD337	ArrayExpress:VIT_08s0007g05390
EnsemblPlantsGene:VIT_08s0007g05390	EnsemblPlants:VIT_08s0007g05390.t01	unigene:Vvi.17846	RefSeq:XP_002273990	RefSeq:XP_002273990.1	SEG:seg

Description

No Description!

Coordinates

chr8:+:19337997..19340103

Molecular Weight (calculated)

24863.2 Da

IEP (calculated)

4.932

GRAVY (calculated)

-0.988

Length

218 amino acids

Sequence
(BLAST)

001: MGMSTESQFH VLAVDDSLID RKLIEKLLKN SSYQVTTVDS GSKALEFLGL HENDPNTPSV SPNSHQEVEV NLIITDYCMP GMTGYDLLKK IKESSSLRNI
101: PVVIMSSENV PSRITRCLEE GAEEFFLKPV QISDVNRLKP HMMKAKSKDQ QQENEEKQEK QEEESKETEK SEPESQQPQQ QQQQQQQQQQ SNNNKRKAIE
201: EGLSPDRTRP RYSGLTVV

Best Arabidopsis Sequence Match ( AT3G57040.1 )
(BLAST)

001: MGMAAESQFH VLAVDDSLFD RKLIERLLQK SSCQVTTVDS GSKALEFLGL RQSTDSNDPN AFSKAPVNHQ VVEVNLIITD YCMPGMTGYD LLKKVKESSA
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV

Arabidopsis Description

ARR9Two-component response regulator ARR9 [Source:UniProtKB/Swiss-Prot;Acc:O80366]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.