Factsheet for VIT_07s0031g02780.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g05390.t01
VIT_17s0000g07580.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	VIT_17s0000g07580.t01	AT1G19050.1	18642946
AT5G08720.1	VIT_17s0000g07580.t01	AT1G74890.1	18642946
AT5G08720.1	VIT_17s0000g07580.t01	AT3G48100.1	18642946
AT5G08720.1	VIT_08s0007g05390.t01	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037740	Potato	cytosol	63.81	72.71
PGSC0003DMT400031503	Potato	cytosol	34.29	67.38
Solyc05g009080.2.1	Tomato	nucleus	63.54	66.71
KRH53975	Soybean	plastid	64.35	65.33
KRH40988	Soybean	nucleus	63.27	64.49
KRH63959	Soybean	plastid	62.45	64.2
KRH59638	Soybean	plastid	63.13	64.0
CDX69927	Canola	plastid	62.18	62.77
AT5G08720.1	Thale cress	plastid	61.22	62.59
CDY21561	Canola	plastid	61.36	62.55
Bra009364.1-P	Field mustard	plastid	61.09	62.02
GSMUA_Achr6P18920_001	Banana	mitochondrion	59.05	60.19
HORVU5Hr1G118480.8	Barley	mitochondrion	50.75	59.11
Os03t0837900-01	Rice	plastid	56.73	57.76
EER93131	Sorghum	plastid	56.33	57.74
TraesCS5B01G520700.1	Wheat	plastid	56.05	56.91
TraesCS4A01G353400.1	Wheat	plastid	55.92	56.85
TraesCS5D01G519900.1	Wheat	plastid	56.6	55.1
Zm00001d034779_P001	Maize	plastid	55.51	55.06
VIT_07s0005g02400.t01	Wine grape	plastid	6.53	16.84

Protein Annotations

EntrezGene:100262883	wikigene:100262883	Gene3D:3.30.530.20	MapMan:35.2	ProteinID:CCB47167	ProteinID:CCB47167.1
InterPro:COQ10_START	UniProt:F6H4G3	EMBL:FN595233	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0010239	GO:GO:0010468
GO:GO:0031426	GO:GO:0042644	GO:GO:0048027	GO:GO:0048507	InterPro:IPR023393	EntrezGene:LOC100262883
wikigene:LOC100262883	PFAM:PF03364	PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	SUPFAM:SSF55961	InterPro:START-like_dom_sf
UniParc:UPI00015CA084	ArrayExpress:VIT_07s0031g02780	EnsemblPlantsGene:VIT_07s0031g02780	EnsemblPlants:VIT_07s0031g02780.t01	unigene:Vvi.22091	RefSeq:XP_002273364
RefSeq:XP_002273364.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:-:19305966..19326527

Molecular Weight (calculated)

84681.8 Da

IEP (calculated)

7.620

GRAVY (calculated)

-0.558

Length

735 amino acids

Sequence
(BLAST)

001: MIALKASSFA TLQFTFNRNR RFHQWLSQAN SRKCAVFCSI DRPKWNPRTH SPKHNHNNHS ESSGKKKNKF IDDDDDDDEE EEGGERKVHC EVEVISWRER
101: RIKAEILVNA DIESVWDALT DYERLADFIP NLVCSGRIPC PHPGRIWLEQ RGFQRALYWH IEARVVLDLQ EVPNAANDRE LRFSMVDGDF KKFEGKWSLK
201: YGKRSSTTSL SYEVNVIPRF NFPAIFLERI IRSDLPVNLQ ALACRSEKNF EGNQKIPFIE SSLGTASIAD VANPGIDLDG ALSVEKLSPG VFKKSHASSS
301: FDPLFQSSSE LSSNWGVFGK VCKLDRPCMV DEVHLRRFDG LLENGGVHRC VVASMTVKAP VREVWNVLTA YETLPEIVPN LAISKILSRE NNKVRILQEG
401: CKGLLYMVLH ARAVLDLCEQ LEQEISFVQV EGDFDSFQGK WILEQLGNQH TLLKYTVESK MHRDSFLSEA IMEEVIYEDL PSNLCAIRDY IEKREASNSL
501: ETSDYVRYSE EQFISSSNGR DVDYHPKPAD EVSDVSGPNP LRQRPRVPGL QRNIEVLKAE LLKFILEHGQ EGFMPMRKQL RKHGRVDIEK AITRMGGFRR
601: IASLMNLSLA YKHRKPKGYW DNLENLKEEI TRFQRSWGMD PSYMPSRKTF ERAGRYDIAR ALEKWGGLHE VSRLLSLKVR HPNRQPNLTK HKRSDFVASP
701: DMVVDEDRTT SKPYVPQDAQ KWLMSLQHLD INWVE

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.