Factsheet for GSMUA_Achr6P18920_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr3P08680_001
GSMUA_Achr5P08230_001
GSMUA_Achr8P09640_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	GSMUA_Achr11P...	AT3G57040.1	18642946
AT5G08720.1	GSMUA_Achr11P...	AT3G57040.1	18642946
AT5G08720.1	GSMUA_Achr3P08680_001	AT3G57040.1	18642946
AT5G08720.1	GSMUA_Achr5P08230_001	AT3G57040.1	18642946
AT5G08720.1	GSMUA_Achr8P09640_001	AT3G57040.1	18642946
AT5G08720.1	GSMUA_AchrUn_...	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400037740	Potato	cytosol	60.06	67.13
Solyc05g009080.2.1	Tomato	nucleus	60.47	62.29
PGSC0003DMT400031503	Potato	cytosol	31.48	60.7
Os03t0837900-01	Rice	plastid	60.61	60.53
HORVU5Hr1G118480.8	Barley	mitochondrion	52.57	60.06
TraesCS4A01G353400.1	Wheat	plastid	60.19	60.03
EER93131	Sorghum	plastid	59.64	59.97
TraesCS5B01G520700.1	Wheat	plastid	60.06	59.81
KRH59638	Soybean	plastid	60.06	59.72
KRH40988	Soybean	nucleus	59.5	59.5
KRH53975	Soybean	plastid	59.5	59.25
VIT_07s0031g02780.t01	Wine grape	plastid	60.19	59.05
Zm00001d034779_P001	Maize	plastid	60.06	58.43
CDY21561	Canola	plastid	58.11	58.11
Bra009364.1-P	Field mustard	plastid	58.25	58.01
KRH63959	Soybean	plastid	57.42	57.9
AT5G08720.1	Thale cress	plastid	57.56	57.72
TraesCS5D01G519900.1	Wheat	plastid	60.33	57.62
CDX69927	Canola	plastid	58.11	57.55
GSMUA_Achr5P18420_001	Banana	cytosol	6.38	18.55

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.2	InterPro:COQ10_START	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0010239	GO:GO:0010468
GO:GO:0031426	GO:GO:0042644	GO:GO:0048027	GO:GO:0048507	EnsemblPlantsGene:GSMUA_Achr6G18920_001	EnsemblPlants:GSMUA_Achr6P18920_001
EnsemblPlants:GSMUA_Achr6T18920_001	InterPro:IPR023393	UniProt:M0T890	PFAM:PF03364	PANTHER:PTHR34060	PANTHER:PTHR34060:SF2
SUPFAM:SSF55961	InterPro:START-like_dom_sf	UniParc:UPI0002954EC9	SEG:seg	:	:

Description

cyclase/dehydrase family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G18920_001]

Coordinates

chr6:-:13108794..13114809

Molecular Weight (calculated)

82282.3 Da

IEP (calculated)

8.079

GRAVY (calculated)

-0.550

Length

721 amino acids

Sequence
(BLAST)

001: MRASACLGRL PSPHLSAGRN LVFLRPPPTS LADPRVFASR SLAGTDPSPK NHPHRDRAHK WKRKEQGVGR GERVGGGAEE VHCDVDVVSW RERRVRAWIL
101: VSADVESVWS VLTDYERLAD FVPNLVYSGR IPCPHKGRIW LEQRGLQRAL YWHIEARVVL DLQEFPNSAN GSELHFSMVD GDFSKFEGKW TVKAGPRSSM
201: ATLSYEVTVV PRFNFPAIFL ERIIGSDLPV NLRAVACRAE RNFEENQKTI MKMNGMSATF RTLYASSLGR FGSASEIETL PNKFKEDHDK PPRATLSAPS
301: TEVNAKWGVY GKACRLDNQC MVDEIHLRRF DGLLENEGAH RCVMASITIK APVREVWNVL TGYEALPEIV PNLAISKILS RDNNKVRVLQ EGCKGLLYMV
401: LHARVVLDLC EDFEHEIKFE QVEGDFDSFK GKWLLEQLGN QHTLLKYVVE SRMHMDTFLS EAILEEVIYE DLPSNLCSIR DAVEDRVGIK NDQRDYSDEH
501: IGSNSDPLHD DKSGQNEPSP NGNAVCTIRQ RPKVPGLQRD VEVLKSELAA FISKYGQDGF MPMRKQLRLH GRVDIEKAIT RMGGFRRIAD LMNLSLAYKQ
601: RKPKGYWDNL ENLQEEISRF QKNWGMDPAY MPTRKSFERA GRYDIARALE KWGGLQEVSR LLSLELRYPR RRSDAEQEGQ NDLKASNEPN GQEKMSNKPL
701: IAQDTHKWLM KLKDLDINWV E

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.