Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G524300.1 | Wheat | cytosol | 26.21 | 50.39 |
| TraesCS3D01G529700.1 | Wheat | plastid | 45.16 | 41.03 |
| Solyc01g068620.2.1 | Tomato | nucleus | 47.58 | 40.69 |
| EES02141 | Sorghum | plastid | 44.76 | 39.93 |
| VIT_07s0005g02400.t01 | Wine grape | plastid | 45.56 | 39.65 |
| TraesCS3A01G524400.1 | Wheat | plastid | 45.16 | 39.44 |
| HORVU3Hr1G114370.2 | Barley | plastid | 46.37 | 38.85 |
| Bra000919.1-P | Field mustard | plastid | 44.35 | 38.6 |
| CDX91843 | Canola | plastid | 44.35 | 38.6 |
| CDX74389 | Canola | plastid | 44.35 | 38.6 |
| AT4G01650.1 | Thale cress | plastid | 43.95 | 37.85 |
| KRH33686 | Soybean | plastid | 41.13 | 37.5 |
| Bra036320.1-P | Field mustard | plastid | 43.55 | 37.5 |
| CDY07128 | Canola | plastid | 43.55 | 37.24 |
| Zm00001d041961_P001 | Maize | plastid | 42.74 | 36.68 |
| CDY58222 | Canola | plastid | 43.95 | 35.39 |
| GSMUA_Achr6P18920_001 | Banana | mitochondrion | 18.55 | 6.38 |
| PGSC0003DMT400037743 | Potato | mitochondrion | 2.02 | 4.81 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P18420_001 | EnsemblPlants:GSMUA_Achr5T18420_001 | EnsemblPlantsGene:GSMUA_Achr5G18420_001 | Gene3D:3.30.530.20 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:COQ10_START | InterPro:IPR023393 |
| InterPro:START-like_dom_sf | PANTHER:PTHR34060 | PANTHER:PTHR34060:SF1 | PFAM:PF03364 | SEG:seg | SUPFAM:SSF55961 |
| UniParc:UPI000294938C | UniProt:M0SZM1 | MapMan:35.2 | : | : | : |
Description
Polyketide cyclase / dehydrase and lipid transport protein [Source:Projected from Arabidopsis thaliana (AT4G01650) TAIR;Acc:AT4G01650]
Coordinates
chr5:+:19867956..19872236
Molecular Weight (calculated)
28468.8 Da
IEP (calculated)
4.715
GRAVY (calculated)
-0.541
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHPLLANSA SNFPRDGPDD DGGDEVLAGL DSASRNGEGE DRFEIEVEKV GEQKNRRRIQ SRVRVNAELE SVWSVLTDYE GLADFIPSLA VSQLLDKKDK
101: FARLYQVGQQ NLALGLKFDA KGVLDCYERD LQVTSRGRRR DIDFMMVEGD FHIFEGKWSI EQIGYDVDED EKILVGKEFQ TTLSYVVELV PKLWLPVRLI
201: EGRLCREVKT NLLCVREEAQ RIQRLKGEML DICSVNLEHK HDELEQGR
101: FARLYQVGQQ NLALGLKFDA KGVLDCYERD LQVTSRGRRR DIDFMMVEGD FHIFEGKWSI EQIGYDVDED EKILVGKEFQ TTLSYVVELV PKLWLPVRLI
201: EGRLCREVKT NLLCVREEAQ RIQRLKGEML DICSVNLEHK HDELEQGR
001: MQSSPILLDF SSAFHHPRAA ALATTSGLTN SHSPTKKYRL ITSFSPSSTL LASSRRCFTC RFGDSSPRFN SNEDETETET DDEDDYCLTD GKTEELVVGD
101: DGVLIELKKL EKSSRRIRSK IGMEASLDSV WSVLTDYEKL SDFIPGLVVS ELVEKEGNRV RLFQMGQQNL ALGLKFNAKA VLDCYEKELE VLPHGRRREI
201: DFKMVEGDFQ LFEGKWSIEQ LDKGIHGEAL DLQFKDFRTT LAYTVDVKPK MWLPVRLVEG RLCKEIRTNL MSIRDAAQKV IEGVIHDL
101: DGVLIELKKL EKSSRRIRSK IGMEASLDSV WSVLTDYEKL SDFIPGLVVS ELVEKEGNRV RLFQMGQQNL ALGLKFNAKA VLDCYEKELE VLPHGRRREI
201: DFKMVEGDFQ LFEGKWSIEQ LDKGIHGEAL DLQFKDFRTT LAYTVDVKPK MWLPVRLVEG RLCKEIRTNL MSIRDAAQKV IEGVIHDL
Arabidopsis Description
Polyketide cyclase / dehydrase and lipid transport protein [Source:UniProtKB/TrEMBL;Acc:Q9M120]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.