Factsheet for VIT_07s0005g02400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002199	Potato	mitochondrion	47.37	46.55
GSMUA_Achr5P18420_001	Banana	cytosol	39.65	45.56
Solyc01g068620.2.1	Tomato	nucleus	45.61	44.83
KRH33686	Soybean	plastid	41.75	43.75
AT4G01650.1	Thale cress	plastid	43.16	42.71
TraesCS3A01G524300.1	Wheat	cytosol	19.3	42.64
Bra036320.1-P	Field mustard	plastid	42.11	41.67
Bra000919.1-P	Field mustard	plastid	41.05	41.05
CDX74389	Canola	plastid	40.7	40.7
CDX91843	Canola	plastid	40.7	40.7
CDY07128	Canola	plastid	41.4	40.69
CDY58222	Canola	plastid	40.7	37.66
TraesCS3A01G524400.1	Wheat	plastid	36.49	36.62
Zm00001d041961_P001	Maize	plastid	36.49	35.99
HORVU3Hr1G114370.2	Barley	plastid	37.19	35.81
EES02141	Sorghum	plastid	34.74	35.61
TraesCS3D01G529700.1	Wheat	plastid	34.04	35.53
VIT_07s0031g02780.t01	Wine grape	plastid	16.84	6.53

Protein Annotations

EntrezGene:100255567	wikigene:100255567	Gene3D:3.30.530.20	MapMan:35.2	ProteinID:CCB60064	ProteinID:CCB60064.1
InterPro:COQ10_START	UniProt:F6HZE9	EMBL:FN596502	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR023393	EntrezGene:LOC100255567	wikigene:LOC100255567
PFAM:PF03364	PANTHER:PTHR34060	PANTHER:PTHR34060:SF1	SUPFAM:SSF55961	InterPro:START-like_dom_sf	UniParc:UPI00015CA829
ArrayExpress:VIT_07s0005g02400	EnsemblPlantsGene:VIT_07s0005g02400	EnsemblPlants:VIT_07s0005g02400.t01	RefSeq:XP_002280721	RefSeq:XP_002280721.1	SEG:seg

Description

No Description!

Coordinates

chr7:-:4756844..4768856

Molecular Weight (calculated)

31690.3 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.405

Length

285 amino acids

Sequence
(BLAST)

001: MDLLIPNMRA FPISSGTPHT LFFRDGGTSP GATAAANRIR SPSSSSSSHA LVGAAAAAAA SPKLFSYKFG YSNEDSTSFG GDADGDEEIE VEKLENNGVE
101: EVEIEKLGNN SRRIRSKIVI DANLHTVWSI LTDYEGLADF IPGLAVSQLV EKGEKFARLF QIGQQDLAFG LKFNAKGIVD CYEKDLESLP FGEKRDIEFK
201: MIEGDFQIFE GKWSIEQRNT NTWEGKDSSV GQEFYTTLTY VVDVEPKRWL PVYLVEGRLS REIKMNLTCI REEAKKRTHN PLSAQ

Best Arabidopsis Sequence Match ( AT4G01650.1 )
(BLAST)

001: MQSSPILLDF SSAFHHPRAA ALATTSGLTN SHSPTKKYRL ITSFSPSSTL LASSRRCFTC RFGDSSPRFN SNEDETETET DDEDDYCLTD GKTEELVVGD
101: DGVLIELKKL EKSSRRIRSK IGMEASLDSV WSVLTDYEKL SDFIPGLVVS ELVEKEGNRV RLFQMGQQNL ALGLKFNAKA VLDCYEKELE VLPHGRRREI
201: DFKMVEGDFQ LFEGKWSIEQ LDKGIHGEAL DLQFKDFRTT LAYTVDVKPK MWLPVRLVEG RLCKEIRTNL MSIRDAAQKV IEGVIHDL

Arabidopsis Description

Polyketide cyclase / dehydrase and lipid transport protein [Source:UniProtKB/TrEMBL;Acc:Q9M120]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.