Factsheet for PGSC0003DMT400002199

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g068620.2.1	Tomato	nucleus	79.66	79.66
VIT_07s0005g02400.t01	Wine grape	plastid	46.55	47.37
KRH33686	Soybean	plastid	40.69	43.38
AT4G01650.1	Thale cress	plastid	42.41	42.71
Bra036320.1-P	Field mustard	plastid	42.41	42.71
CDY07128	Canola	plastid	42.41	42.41
Bra000919.1-P	Field mustard	plastid	41.38	42.11
CDX74389	Canola	plastid	41.38	42.11
CDX91843	Canola	plastid	41.38	42.11
CDY58222	Canola	plastid	42.41	39.94
PGSC0003DMT400031503	Potato	cytosol	13.1	10.16
PGSC0003DMT400037740	Potato	cytosol	19.66	8.84
PGSC0003DMT400037743	Potato	mitochondrion	2.76	7.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400002199	EnsemblPlantsGene:PGSC0003DMG400000842	EntrezGene:102603940	Gene3D:3.30.530.20	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:COQ10_START	InterPro:IPR023393
InterPro:START-like_dom_sf	PANTHER:PTHR34060	PANTHER:PTHR34060:SF1	PFAM:PF03364	PGSC:PGSC0003DMG400000842	RefSeq:XP_006365452.1
SEG:seg	SUPFAM:SSF55961	UniParc:UPI000295A9E9	UniProt:M0ZJS4	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000842]

Coordinates

chr1:+:63850620..63854067

Molecular Weight (calculated)

33084.8 Da

IEP (calculated)

4.805

GRAVY (calculated)

-0.580

Length

290 amino acids

Sequence
(BLAST)

001: MQVQYQLWWH TNTTTSSLPL SSIFYRHEAR AAAAARHRHD AALSTAAFSL RFNRNPNLTS RRFRLDTVTG SVDVGGNATV DEYDDGDTRN DTGEEGNDEE
101: EEDGVETEIE KMGKNRRRIR SKVAVKASLH SVWKVLTDYE RLADFIPGLA VCQLLEKEPN FARLLQIGEQ DLAFGLKFNA KGVIECYEKD LEDLPTGQRR
201: DIEFKMVEGD FKIFEGKWSI EQCKTGGDQE LDSSLDEPFN TTLSYIVDVE PKLWLPVRLI EGRLCKEIKI NLQSVRDEAQ KVYLSSFSSY

Best Arabidopsis Sequence Match ( AT4G01650.1 )
(BLAST)

001: MQSSPILLDF SSAFHHPRAA ALATTSGLTN SHSPTKKYRL ITSFSPSSTL LASSRRCFTC RFGDSSPRFN SNEDETETET DDEDDYCLTD GKTEELVVGD
101: DGVLIELKKL EKSSRRIRSK IGMEASLDSV WSVLTDYEKL SDFIPGLVVS ELVEKEGNRV RLFQMGQQNL ALGLKFNAKA VLDCYEKELE VLPHGRRREI
201: DFKMVEGDFQ LFEGKWSIEQ LDKGIHGEAL DLQFKDFRTT LAYTVDVKPK MWLPVRLVEG RLCKEIRTNL MSIRDAAQKV IEGVIHDL

Arabidopsis Description

Polyketide cyclase / dehydrase and lipid transport protein [Source:UniProtKB/TrEMBL;Acc:Q9M120]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.