Factsheet for Bra000919.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74389	Canola	plastid	96.14	96.14
AT4G01650.1	Thale cress	plastid	78.25	77.43
Bra036320.1-P	Field mustard	plastid	76.14	75.35
GSMUA_Achr5P18420_001	Banana	cytosol	38.6	44.35
KRH33686	Soybean	plastid	41.4	43.38
Solyc01g068620.2.1	Tomato	nucleus	42.81	42.07
TraesCS3A01G524300.1	Wheat	cytosol	18.95	41.86
PGSC0003DMT400002199	Potato	mitochondrion	42.11	41.38
VIT_07s0005g02400.t01	Wine grape	plastid	41.05	41.05
EES02141	Sorghum	plastid	35.09	35.97
TraesCS3D01G529700.1	Wheat	plastid	33.68	35.16
HORVU3Hr1G114370.2	Barley	plastid	35.79	34.46
TraesCS3A01G524400.1	Wheat	plastid	33.68	33.8
Zm00001d041961_P001	Maize	plastid	33.33	32.87
Bra009364.1-P	Field mustard	plastid	21.4	8.43

Protein Annotations

EnsemblPlants:Bra000919.1	EnsemblPlants:Bra000919.1-P	EnsemblPlantsGene:Bra000919	Gene3D:3.30.530.20	InterPro:COQ10_START	InterPro:IPR023393
InterPro:START-like_dom_sf	PANTHER:PTHR34060	PANTHER:PTHR34060:SF1	PFAM:PF03364	SEG:seg	SUPFAM:SSF55961
UniParc:UPI0002540681	UniProt:M4C9P0	MapMan:35.2	:	:	:

Description

AT4G01650 (E=3e-123) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 322 Blast hits to 309 proteins in 56 species: Archae - 0; Bacteria - 121; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 155 (source: NCBI BLink).

Coordinates

chrA03:+:13911841..13913376

Molecular Weight (calculated)

31962.4 Da

IEP (calculated)

4.755

GRAVY (calculated)

-0.209

Length

285 amino acids

Sequence
(BLAST)

001: MQLLDFSSAF LHPRAAALAT TSGVTISTKF HSTTVLSPCF PPSSTPLLAS SPSRRCFTCR IGEDDYCNKD ESETDEDDYL VDCLTDGKSE ELAVVGDDGV
101: LIEVKKLEKS SRRIRSKIGM EASLDAVWSV LTDYEKLSDF IPGLVVSELV EKEGNRVRLF QMGQQNLALG LKFNAKAVLD CFEKELQILP NGRRREIDFK
201: MVEGDFQLFE GKWSIEQLDK GIQGEALDLQ FKDFPTTLAY TVDVKPKMWL PVRLVEGRLC KEIKTNLLSI RDTAQKVIEG VIHDL

Best Arabidopsis Sequence Match ( AT4G01650.1 )
(BLAST)

001: MQSSPILLDF SSAFHHPRAA ALATTSGLTN SHSPTKKYRL ITSFSPSSTL LASSRRCFTC RFGDSSPRFN SNEDETETET DDEDDYCLTD GKTEELVVGD
101: DGVLIELKKL EKSSRRIRSK IGMEASLDSV WSVLTDYEKL SDFIPGLVVS ELVEKEGNRV RLFQMGQQNL ALGLKFNAKA VLDCYEKELE VLPHGRRREI
201: DFKMVEGDFQ LFEGKWSIEQ LDKGIHGEAL DLQFKDFRTT LAYTVDVKPK MWLPVRLVEG RLCKEIRTNL MSIRDAAQKV IEGVIHDL

Arabidopsis Description

Polyketide cyclase / dehydrase and lipid transport protein [Source:UniProtKB/TrEMBL;Acc:Q9M120]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.