CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74389	Canola	plastid	43.75	41.75
VIT_07s0005g02400.t01	Wine grape	plastid	43.75	41.75
Bra000919.1-P	Field mustard	plastid	43.38	41.4
CDX91843	Canola	plastid	43.38	41.4
Bra036320.1-P	Field mustard	plastid	43.75	41.32
GSMUA_Achr5P18420_001	Banana	cytosol	37.5	41.13
TraesCS3A01G524300.1	Wheat	cytosol	19.49	41.09
Solyc01g068620.2.1	Tomato	nucleus	43.75	41.03
AT4G01650.1	Thale cress	plastid	43.38	40.97
PGSC0003DMT400002199	Potato	mitochondrion	43.38	40.69
CDY07128	Canola	plastid	43.01	40.34
CDY58222	Canola	plastid	43.75	38.64
TraesCS3D01G529700.1	Wheat	plastid	35.29	35.16
TraesCS3A01G524400.1	Wheat	plastid	36.4	34.86
HORVU3Hr1G114370.2	Barley	plastid	37.5	34.46
EES02141	Sorghum	plastid	33.46	32.73
Zm00001d041961_P001	Maize	plastid	34.19	32.18
KRH63959	Soybean	plastid	23.53	8.95
KRH53975	Soybean	plastid	23.53	8.84
KRH40988	Soybean	nucleus	20.59	7.77
KRH59638	Soybean	plastid	20.59	7.72

Protein Annotations

EntrezGene:100816418	Gene3D:3.30.530.20	MapMan:35.2	EMBL:ACUP02006550	InterPro:COQ10_START	EnsemblPlantsGene:GLYMA_10G139600
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536
UniProt:I1LAW0	InterPro:IPR023393	EnsemblPlants:KRH33686	ProteinID:KRH33686	ProteinID:KRH33686.1	PFAM:PF03364
PANTHER:PTHR34060	PANTHER:PTHR34060:SF1	SUPFAM:SSF55961	InterPro:START-like_dom_sf	UniParc:UPI000233C7C7	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:37327677..37331902

Molecular Weight (calculated)

31045.2 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.282

Length

272 amino acids

Sequence
(BLAST)

001: MRAIPVSPES HCVFLFPQPT TPSFSSNSIA ITHSFHPFHF KPHHSLSTPK PCSFKFRSLL YCASKSDPTT LEDDEVSEES LVEDGVCIEV MKLEKNSRRI
101: QSRISIEAPL SAVWNILTDY ERLADFVPGL AVSQLLQKGD NYARLLQIGQ QNIAFGIKFN AKVIVDCYEK ELETLPSGMK QEIEFKMIEG DFQLFEGKWS
201: ILQHFNNESC EQSQVRQVST TLSYTVDVKP KMWLPIRLIE GRLCNEIKTN LVSVRDEAQK VTLKTVQTHQ FE

Best Arabidopsis Sequence Match ( AT4G01650.2 )
(BLAST)

001: MSIRAQEIQT LEDGKTEELV VGDDGVLIEL KKLEKSSRRI RSKIGMEASL DSVWSVLTDY EKLSDFIPGL VVSELVEKEG NRVRLFQMGQ QNLALGLKFN
101: AKAVLDCYEK ELEVLPHGRR REIDFKMVEG DFQLFEGKWS IEQLDKGIHG EALDLQFKDF RTTLAYTVDV KPKMWLPVRL VEGRLCKEIR TNLMSIRDAA
201: QKVIEGVIHD L

Arabidopsis Description

Polyketide cyclase / dehydrase and lipid transport protein [Source:UniProtKB/TrEMBL;Acc:Q9M120]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.