CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95133
KRH03376
KRH54462
KRH57009
KRH63457
KRH66808

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	KRH03376	AT1G19050.1	18642946
AT5G08720.1	KRH54462	AT1G19050.1	18642946
AT5G08720.1	KRH57009	AT1G19050.1	18642946
AT5G08720.1	KRH63457	AT1G19050.1	18642946
AT5G08720.1	KRH03376	AT1G74890.1	18642946
AT5G08720.1	KRH54462	AT1G74890.1	18642946
AT5G08720.1	KRH57009	AT1G74890.1	18642946
AT5G08720.1	KRH63457	AT1G74890.1	18642946
AT5G08720.1	KRH03376	AT3G48100.1	18642946
AT5G08720.1	KRH54462	AT3G48100.1	18642946
AT5G08720.1	KRH57009	AT3G48100.1	18642946
AT5G08720.1	KRH63457	AT3G48100.1	18642946
AT5G08720.1	KRG95133	AT3G57040.1	18642946
AT5G08720.1	KRH66808	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53975	Soybean	plastid	93.99	92.82
KRH40988	Soybean	nucleus	69.09	68.52
KRH59638	Soybean	plastid	68.81	67.86
PGSC0003DMT400037740	Potato	cytosol	59.86	66.36
PGSC0003DMT400031503	Potato	cytosol	33.99	64.97
VIT_07s0031g02780.t01	Wine grape	plastid	64.2	62.45
Solyc05g009080.2.1	Tomato	nucleus	60.7	62.0
AT5G08720.1	Thale cress	plastid	59.16	58.83
CDX69927	Canola	plastid	59.58	58.52
Bra009364.1-P	Field mustard	plastid	59.02	58.29
CDY21561	Canola	plastid	58.6	58.11
GSMUA_Achr6P18920_001	Banana	mitochondrion	57.9	57.42
HORVU5Hr1G118480.8	Barley	mitochondrion	49.09	55.63
EER93131	Sorghum	plastid	55.66	55.51
Os03t0837900-01	Rice	plastid	55.66	55.12
TraesCS5B01G520700.1	Wheat	plastid	55.66	54.97
TraesCS4A01G353400.1	Wheat	plastid	55.52	54.91
Zm00001d034779_P001	Maize	plastid	55.38	53.44
TraesCS5D01G519900.1	Wheat	plastid	55.1	52.19
KRH33686	Soybean	plastid	8.95	23.53

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.2	EMBL:ACUP02002732	InterPro:COQ10_START	EnsemblPlantsGene:GLYMA_04G207200	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0031426	UniProt:I1JXW9	InterPro:IPR023393	EnsemblPlants:KRH63959
ProteinID:KRH63959	ProteinID:KRH63959.1	PFAM:PF03364	PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	SUPFAM:SSF55961
InterPro:START-like_dom_sf	UniParc:UPI00029523D3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:47988369..47993590

Molecular Weight (calculated)

81678.2 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.499

Length

715 amino acids

Sequence
(BLAST)

001: MIASTSTSTN VVPHPLRFLS KPTSHSTTRF LSLTLHSRGI AVALSSSSRT TPLKPTCHFN SKDGSFELHE DEDERDVHCE VQVISWRERK VNAQITVDAD
101: TESVWNALTD YEHLADFIPN LVWSGRIPCP YPGRIWLEQR GFQRAMYWHI EARVVLDLRE VINSAWDREL HFSMVDGDFK KFDGKWSVKS GTRSSTAILS
201: YEVDVIPRFN FPAIFLERII RSDLPVNLRA LAYRAERNFV GYQKLPVSEN HLRKTYAAIN GSSVKKINGA SSESFKKING ALCGSDKLPP AENKKEIATS
301: VSGSMLTSSS EVRSNWGVFG KVCRLDRPRM VDEENGGVHR CVVASITVKA PVREVWNILT AYETLPEIVP NLAISKVVSR DNSKVRILQE GCKGLLYMVL
401: HARVVLDLCE YLEQEISFEQ VEGDFDSFRG KWIFEQLGNH HTLLKYSVES KMRKDTFLSE AIMEEVIYED LPSNLSAIRD YIENMNASKS SEVCEQNTNS
501: GQQIVSSGSQ KDDNSGSTEE VPHCDVRCSS QQRSKVPGLQ RNIKVLESEL LKFIAEHGQE GFMPMRKQLR LHGRVDIEKA ITRMGGFRKI ATILNLSLAY
601: KHRKPKGYWD NLENLQEEIS RFQRSWGIDP SFMPSRKSFE RAGRYDIARA LEKWGGLHEV SRLLSLKVRQ RSRQDNLAKD KRSDHTDSEM KTPCIPQDTQ
701: KWLTKLKQFD MNWFE

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.