CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES02064
KXG22820
KXG27703

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08720.1	EES02064	AT3G57040.1	18642946
AT5G08720.1	KXG22820	AT3G57040.1	18642946
AT5G08720.1	KXG27703	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034779_P001	Maize	plastid	89.4	86.5
Os03t0837900-01	Rice	plastid	74.2	73.68
HORVU5Hr1G118480.8	Barley	mitochondrion	63.32	71.95
TraesCS5B01G520700.1	Wheat	plastid	72.52	71.82
TraesCS4A01G353400.1	Wheat	plastid	71.83	71.23
TraesCS5D01G519900.1	Wheat	plastid	72.8	69.14
PGSC0003DMT400037740	Potato	cytosol	57.88	64.34
PGSC0003DMT400031503	Potato	cytosol	31.24	59.89
GSMUA_Achr6P18920_001	Banana	mitochondrion	59.97	59.64
Solyc05g009080.2.1	Tomato	nucleus	58.16	59.57
AT5G08720.1	Thale cress	plastid	56.62	56.47
VIT_07s0031g02780.t01	Wine grape	plastid	57.74	56.33
KRH53975	Soybean	plastid	56.76	56.22
CDY21561	Canola	plastid	56.21	55.89
KRH63959	Soybean	plastid	55.51	55.66
KRH59638	Soybean	plastid	56.21	55.59
Bra009364.1-P	Field mustard	plastid	56.07	55.52
KRH40988	Soybean	nucleus	55.79	55.48
CDX69927	Canola	plastid	56.21	55.36
EES02141	Sorghum	plastid	6.97	17.99

Protein Annotations

Gene3D:3.30.530.20	MapMan:35.2	EntrezGene:8079659	UniProt:C5WTW6	InterPro:COQ10_START	ncoils:Coil
EnsemblPlants:EER93131	ProteinID:EER93131	ProteinID:EER93131.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009791	GO:GO:0009987	GO:GO:0010239	GO:GO:0010468
GO:GO:0031426	GO:GO:0042644	GO:GO:0048027	GO:GO:0048507	InterPro:IPR023393	PFAM:PF03364
PANTHER:PTHR34060	PANTHER:PTHR34060:SF2	EnsemblPlantsGene:SORBI_3001G020600	SUPFAM:SSF55961	InterPro:START-like_dom_sf	unigene:Sbi.12858
UniParc:UPI0001A8289B	RefSeq:XP_002466133.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:1706890..1711957

Molecular Weight (calculated)

80855.2 Da

IEP (calculated)

8.737

GRAVY (calculated)

-0.482

Length

717 amino acids

Sequence
(BLAST)

001: MRALASPTAS FLPGIPSPSP RARGALRSAP AALSRAPSGR SVAASAAAAT GDHWGADHQH YHGGRAGASE AGSPASARGV KCDVDVVSWR ERRVLASVPV
101: AADVDTLWQV ITDYERLADF IPNLVQSGTI PCPHEGRIWL EQRGLQQALY WHIEARVVLD LQEIHDSING RELHFSMVDG DFKKFEGKWS IRSGPRSSSA
201: VLLYEVNVIP RFNFPAIFLE KIIRSDLPVN LGALACRAEK IYLENQSCGS RKFSVEDLKP SSTSSQLDNF RSRTVDTSSS KFKEAPPTSG VNSVLPSPAS
301: ELISKWGVYG NVCRIDRPCV VDEIHLRRFD GMLEHEGAHR CVFASITVKA PVREVWNVLT AYENLPEFVP NLAISRIVLR DNNKVRIMQE GCKGLLYMVL
401: HARVVMDLRE KFEQEIRFEQ VEGDFYSFKG KWRLEQLGDQ HTLLKYMVET KMHRDTFLSE SILEEVIYED LPSNLCAIRD YIEKAGAKGS NSTAHSDVSI
501: DPDAYHAESR QSEQASVSCS SSTMKQRPKV PGLQKDIEVL KSELENFIAE YGQYGFMPKR KHLRSHGRVD IEKAITRMGG FRKIASIMNL SLSYKNRKPR
601: GYWDNLENLQ EEISRFQKSW GMDPSYMPSR KSFERAGRYD IARALEKWGG VQEVSRLLSL KLRRPRRQGD LDDESRSESP SEMTKKHGVK PDKGNVSPDA
701: QKWLLKLKDL DVNWVEY

Best Arabidopsis Sequence Match ( AT5G08720.1 )
(BLAST)

001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY

Arabidopsis Description

At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.