CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041961_P001	Maize	plastid	69.42	66.78
TraesCS3D01G529700.1	Wheat	plastid	57.19	58.24
TraesCS3A01G524400.1	Wheat	plastid	58.27	57.04
HORVU3Hr1G114370.2	Barley	plastid	58.27	54.73
GSMUA_Achr5P18420_001	Banana	cytosol	39.93	44.76
CDX74389	Canola	plastid	37.05	36.14
Solyc01g068620.2.1	Tomato	nucleus	37.41	35.86
CDX91843	Canola	plastid	36.69	35.79
Bra000919.1-P	Field mustard	plastid	35.97	35.09
VIT_07s0005g02400.t01	Wine grape	plastid	35.61	34.74
AT4G01650.1	Thale cress	plastid	34.89	33.68
KRH33686	Soybean	plastid	32.73	33.46
CDY07128	Canola	plastid	34.53	33.1
Bra036320.1-P	Field mustard	plastid	34.17	32.99
CDY58222	Canola	plastid	32.37	29.22
EER93131	Sorghum	plastid	17.99	6.97
PGSC0003DMT400037743	Potato	mitochondrion	2.16	5.77

Protein Annotations

EnsemblPlants:EES02141	EnsemblPlantsGene:SORBI_3003G443500	Gene3D:3.30.530.20	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:COQ10_START	InterPro:IPR023393	InterPro:START-like_dom_sf
PANTHER:PTHR34060	PANTHER:PTHR34060:SF1	PFAM:PF03364	ProteinID:EES02141	ProteinID:EES02141.2	SEG:seg
SUPFAM:SSF55961	unigene:Sbi.20986	UniParc:UPI00081AD7C5	UniProt:C5XJD3	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr3:-:74145120..74148802

Molecular Weight (calculated)

31302.9 Da

IEP (calculated)

4.906

GRAVY (calculated)

-0.500

Length

278 amino acids

Sequence
(BLAST)

001: MATSSSCCCV SSHGHGHGLY RPLHRLRTAS PARLRLVFPS VPSPRFSSRR IPASPDPPLD VAAGDATRED DWPAPDDDDD QDQEDRDELI GFQIQVSKVG
101: KRNRRLVRAR VRVHAPLEAV WATLTDYEGL ADFIPGLSEC RLLDQHDGFA RIYQVGEQDL ALGFKFNAKG TIDCYEGDME VLPDAGARRR EIAFNMIDGD
201: FKLFQGKWSV EEVDGSIVEG GGNSEEQEFQ TTLSYLLELE PKLWVPVRLL EGRICSEIKN NLVCIREQAQ RIQRLQHE

Best Arabidopsis Sequence Match ( AT4G01650.1 )
(BLAST)

001: MQSSPILLDF SSAFHHPRAA ALATTSGLTN SHSPTKKYRL ITSFSPSSTL LASSRRCFTC RFGDSSPRFN SNEDETETET DDEDDYCLTD GKTEELVVGD
101: DGVLIELKKL EKSSRRIRSK IGMEASLDSV WSVLTDYEKL SDFIPGLVVS ELVEKEGNRV RLFQMGQQNL ALGLKFNAKA VLDCYEKELE VLPHGRRREI
201: DFKMVEGDFQ LFEGKWSIEQ LDKGIHGEAL DLQFKDFRTT LAYTVDVKPK MWLPVRLVEG RLCKEIRTNL MSIRDAAQKV IEGVIHDL

Arabidopsis Description

Polyketide cyclase / dehydrase and lipid transport protein [Source:UniProtKB/TrEMBL;Acc:Q9M120]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.