Factsheet for Solyc01g068620.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002199	Potato	mitochondrion	79.66	79.66
GSMUA_Achr5P18420_001	Banana	cytosol	40.69	47.58
VIT_07s0005g02400.t01	Wine grape	plastid	44.83	45.61
AT4G01650.1	Thale cress	plastid	44.14	44.44
TraesCS3A01G524300.1	Wheat	cytosol	19.66	44.19
KRH33686	Soybean	plastid	41.03	43.75
CDX74389	Canola	plastid	42.41	43.16
CDX91843	Canola	plastid	42.41	43.16
Bra000919.1-P	Field mustard	plastid	42.07	42.81
Bra036320.1-P	Field mustard	plastid	40.69	40.97
CDY07128	Canola	plastid	40.69	40.69
TraesCS3D01G529700.1	Wheat	plastid	36.9	39.19
CDY58222	Canola	plastid	41.03	38.64
HORVU3Hr1G114370.2	Barley	plastid	38.62	37.84
EES02141	Sorghum	plastid	35.86	37.41
TraesCS3A01G524400.1	Wheat	plastid	36.55	37.32
Zm00001d041961_P001	Maize	plastid	33.79	33.91
Solyc05g009080.2.1	Tomato	nucleus	21.38	8.86

Protein Annotations

EnsemblPlants:Solyc01g068620.2.1	EnsemblPlantsGene:Solyc01g068620.2	Gene3D:3.30.530.20	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:COQ10_START	InterPro:IPR023393	InterPro:START-like_dom_sf
PANTHER:PTHR34060	PANTHER:PTHR34060:SF1	PFAM:PF03364	SEG:seg	SUPFAM:SSF55961	UniParc:UPI0002761741
UniProt:K4AXA7	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr1:+:77830549..77833911

Molecular Weight (calculated)

32997.7 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.518

Length

290 amino acids

Sequence
(BLAST)

001: MQVQYQLWWH TITTSSLPLS SIFYRHEATA VAAARYRHDT ALSTGAFSLR LNRNPNLTSG RFRLDTVTCS LDIGGNATID EYDDGDTRND TGEDGSDEEE
101: EDGGVETEIE KMGKNRRRIR SKIVVKASLQ SVWEVLTDYE RLADFIPGLA VCQLLEKEPN FARLLQIGEQ NLAFGLKFNA KGVIDCYEKD LEDLPTGQRR
201: DIEFKMVEGD FKNFEGKWSI EQCKTGGDQE LDSSLDEPFH TTLSYIVDVE PKLWLPVRLI EGRLCKEINI NLQSVRDEAQ KVYLSSFSSY

Best Arabidopsis Sequence Match ( AT4G01650.1 )
(BLAST)

001: MQSSPILLDF SSAFHHPRAA ALATTSGLTN SHSPTKKYRL ITSFSPSSTL LASSRRCFTC RFGDSSPRFN SNEDETETET DDEDDYCLTD GKTEELVVGD
101: DGVLIELKKL EKSSRRIRSK IGMEASLDSV WSVLTDYEKL SDFIPGLVVS ELVEKEGNRV RLFQMGQQNL ALGLKFNAKA VLDCYEKELE VLPHGRRREI
201: DFKMVEGDFQ LFEGKWSIEQ LDKGIHGEAL DLQFKDFRTT LAYTVDVKPK MWLPVRLVEG RLCKEIRTNL MSIRDAAQKV IEGVIHDL

Arabidopsis Description

Polyketide cyclase / dehydrase and lipid transport protein [Source:UniProtKB/TrEMBL;Acc:Q9M120]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.