Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400037740 | Potato | cytosol | 87.43 | 50.7 |
| Solyc05g009080.2.1 | Tomato | nucleus | 86.36 | 46.14 |
| HORVU5Hr1G118480.8 | Barley | mitochondrion | 60.43 | 35.82 |
| VIT_07s0031g02780.t01 | Wine grape | plastid | 67.38 | 34.29 |
| KRH63959 | Soybean | plastid | 64.97 | 33.99 |
| KRH53975 | Soybean | plastid | 64.71 | 33.43 |
| KRH40988 | Soybean | nucleus | 62.83 | 32.59 |
| KRH59638 | Soybean | plastid | 62.57 | 32.28 |
| AT5G08720.1 | Thale cress | plastid | 61.23 | 31.85 |
| CDY21561 | Canola | plastid | 61.23 | 31.76 |
| CDX69927 | Canola | plastid | 61.76 | 31.73 |
| Bra009364.1-P | Field mustard | plastid | 61.23 | 31.63 |
| Os03t0837900-01 | Rice | plastid | 60.96 | 31.58 |
| GSMUA_Achr6P18920_001 | Banana | mitochondrion | 60.7 | 31.48 |
| EER93131 | Sorghum | plastid | 59.89 | 31.24 |
| TraesCS5B01G520700.1 | Wheat | plastid | 60.43 | 31.22 |
| TraesCS4A01G353400.1 | Wheat | plastid | 59.63 | 30.84 |
| Zm00001d034779_P001 | Maize | plastid | 59.63 | 30.09 |
| TraesCS5D01G519900.1 | Wheat | plastid | 59.89 | 29.67 |
| PGSC0003DMT400002199 | Potato | mitochondrion | 10.16 | 13.1 |
| PGSC0003DMT400037743 | Potato | mitochondrion | 2.14 | 7.69 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400031503 | EnsemblPlantsGene:PGSC0003DMG400012080 | Gene3D:3.30.530.20 | InterPro:COQ10_START | InterPro:IPR023393 | InterPro:START-like_dom_sf |
| PANTHER:PTHR34060 | PANTHER:PTHR34060:SF2 | PFAM:PF03364 | PGSC:PGSC0003DMG400012080 | SEG:seg | SUPFAM:SSF55961 |
| UniParc:UPI000294C154 | UniProt:M1AVS4 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400012080]
Coordinates
chr00:+:33843437..33845367
Molecular Weight (calculated)
42695.7 Da
IEP (calculated)
6.848
GRAVY (calculated)
-0.476
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDGDFKKFE GKWSVRVGTR SSTAILSYEV SVIPRFNFPA IFLERIFRSD LPVNRQALSC RAENNYQGYQ SVTKEEPGSY LISTKTDIDH VISHENKSSG
101: EHLKVKFVKA TFGRSTPVTS NENGGVHRCV VASITVKAPV REEGCKGLLY MVLHARVVLD LSELIVQEIS FEQVEGDFDS FEGKWILEQL GSHHTLLKYS
201: VESKMHKNSF LSEAIMEEVI YEDLPSNLCA IRDYIEERET EKPLEKFNHD EFREASVSSS MKDSSVYYDR QAGQNSDSSS LHSPRQRPKV SGLQRDIEVL
301: KAELLAFISE HGQEGFMPMR KQLRKHGIVD IEKAITRMGG FRRISSLMNL SLAYKHRKPK VYWDSLENLQ EEVS
101: EHLKVKFVKA TFGRSTPVTS NENGGVHRCV VASITVKAPV REEGCKGLLY MVLHARVVLD LSELIVQEIS FEQVEGDFDS FEGKWILEQL GSHHTLLKYS
201: VESKMHKNSF LSEAIMEEVI YEDLPSNLCA IRDYIEERET EKPLEKFNHD EFREASVSSS MKDSSVYYDR QAGQNSDSSS LHSPRQRPKV SGLQRDIEVL
301: KAELLAFISE HGQEGFMPMR KQLRKHGIVD IEKAITRMGG FRRISSLMNL SLAYKHRKPK VYWDSLENLQ EEVS
001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY
Arabidopsis Description
At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.