Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0952500-01 | |
| Os11t0143300-02 | |
| Os12t0139400-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08720.1 | Os01t0952500-01 | AT3G57040.1 | 18642946 |
| AT5G08720.1 | Os11t0143300-02 | AT3G57040.1 | 18642946 |
| AT5G08720.1 | Os12t0139400-01 | AT3G57040.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G520700.1 | Wheat | plastid | 76.18 | 75.97 |
| TraesCS4A01G353400.1 | Wheat | plastid | 75.9 | 75.8 |
| HORVU5Hr1G118480.8 | Barley | mitochondrion | 65.51 | 74.96 |
| EER93131 | Sorghum | plastid | 73.68 | 74.2 |
| TraesCS5D01G519900.1 | Wheat | plastid | 76.59 | 73.25 |
| Zm00001d034779_P001 | Maize | plastid | 71.88 | 70.04 |
| PGSC0003DMT400037740 | Potato | cytosol | 57.76 | 64.65 |
| PGSC0003DMT400031503 | Potato | cytosol | 31.58 | 60.96 |
| GSMUA_Achr6P18920_001 | Banana | mitochondrion | 60.53 | 60.61 |
| Solyc05g009080.2.1 | Tomato | nucleus | 58.45 | 60.29 |
| KRH40988 | Soybean | nucleus | 56.93 | 57.0 |
| AT5G08720.1 | Thale cress | plastid | 56.65 | 56.88 |
| VIT_07s0031g02780.t01 | Wine grape | plastid | 57.76 | 56.73 |
| KRH59638 | Soybean | plastid | 56.93 | 56.69 |
| KRH53975 | Soybean | plastid | 56.79 | 56.63 |
| CDY21561 | Canola | plastid | 55.82 | 55.89 |
| Bra009364.1-P | Field mustard | plastid | 55.96 | 55.8 |
| KRH63959 | Soybean | plastid | 55.12 | 55.66 |
| CDX69927 | Canola | plastid | 55.82 | 55.36 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.2 | EntrezGene:4334714 | ProteinID:ABF99781.1 | ProteinID:BAF13748.1 | ProteinID:BAS87272.1 |
| InterPro:COQ10_START | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010239 | GO:GO:0010468 | GO:GO:0031426 | GO:GO:0042644 |
| GO:GO:0048027 | GO:GO:0048507 | InterPro:IPR023393 | EnsemblPlantsGene:Os03g0837900 | EnsemblPlants:Os03t0837900-01 | PFAM:PF03364 |
| PANTHER:PTHR34060 | PANTHER:PTHR34060:SF2 | UniProt:Q10AX3 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf | UniParc:UPI0000DB4F04 |
| RefSeq:XP_015630044.1 | SEG:seg | : | : | : | : |
Description
Streptomyces cyclase/dehydrase family protein. (Os03t0837900-01)
Coordinates
chr3:+:35212888..35218133
Molecular Weight (calculated)
81009.5 Da
IEP (calculated)
9.625
GRAVY (calculated)
-0.452
Length
722 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRVLVSSS SSSSSAAAAA FLPRIPNPCA NPSHRGAPPC GAALWRHHSG RAVTTAAAAA ATGDHWGAEY HGGGGGRGGK SAAGPGVQCD VDVVSWRERR
101: VFASVAVAAD VDTVWRVITD YERLAEFIPN LVHSGRIPCP HQGRVWLEQR GLQQALYWHI EARVVLDLKE VPDAVNGREL HFSMVDGDFK KFEGKWSIRS
201: GPRSSSAILL YEVNVIPRFN FPAIFLERII RSDLPVNLGA LACRAENIYL GNQRHGTAKF SGAGSRFHNF RNATTENDAI APSKFKETPP SGLGGVLASP
301: PSELNSKWGV YGNVCRLDRP CVVDEIHLRR FDGLLEHEGA HRFVFASITV KAPVREVWNI LTAYEKLPEF VPNLAISRII RRDNNKVRIL QEGCKGLLYM
401: VLHARVVMDL REKLEREISF EQVEGDFYSF KGKWRLEQLG DQHTLLKYMV ETKMHKDTFL SESILEEVIY EDLPSNLCAI RDYIEKAEAE SGNSTSSSIV
501: ASNADTIAID YAEGRQSEQA STSCSSSPVK QRPKVPGLQK DIEVLKSELE KFIAKYGQDG FMPKRKHLRL HGRVDIEKAI TRMGGFRKIA SIMNLSLSYK
601: NRKPRGYWDN LENLQEEIRR FQKNWGMDPA YMPSRKSFER AGRYDIARAL EKWGGVHEVS RLLSLELRRP RRRANSDDES KAGSSYAITN KHASKPNKPS
701: VSPDKQKWLL KLKDLDANWI EY
101: VFASVAVAAD VDTVWRVITD YERLAEFIPN LVHSGRIPCP HQGRVWLEQR GLQQALYWHI EARVVLDLKE VPDAVNGREL HFSMVDGDFK KFEGKWSIRS
201: GPRSSSAILL YEVNVIPRFN FPAIFLERII RSDLPVNLGA LACRAENIYL GNQRHGTAKF SGAGSRFHNF RNATTENDAI APSKFKETPP SGLGGVLASP
301: PSELNSKWGV YGNVCRLDRP CVVDEIHLRR FDGLLEHEGA HRFVFASITV KAPVREVWNI LTAYEKLPEF VPNLAISRII RRDNNKVRIL QEGCKGLLYM
401: VLHARVVMDL REKLEREISF EQVEGDFYSF KGKWRLEQLG DQHTLLKYMV ETKMHKDTFL SESILEEVIY EDLPSNLCAI RDYIEKAEAE SGNSTSSSIV
501: ASNADTIAID YAEGRQSEQA STSCSSSPVK QRPKVPGLQK DIEVLKSELE KFIAKYGQDG FMPKRKHLRL HGRVDIEKAI TRMGGFRKIA SIMNLSLSYK
601: NRKPRGYWDN LENLQEEIRR FQKNWGMDPA YMPSRKSFER AGRYDIARAL EKWGGVHEVS RLLSLELRRP RRRANSDDES KAGSSYAITN KHASKPNKPS
701: VSPDKQKWLL KLKDLDANWI EY
001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY
Arabidopsis Description
At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.