Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21561 | Canola | plastid | 83.17 | 82.94 |
| Bra009364.1-P | Field mustard | plastid | 81.92 | 81.35 |
| CDX69927 | Canola | plastid | 81.92 | 80.91 |
| PGSC0003DMT400037740 | Potato | cytosol | 60.92 | 67.91 |
| Solyc05g009080.2.1 | Tomato | nucleus | 61.2 | 62.86 |
| PGSC0003DMT400031503 | Potato | cytosol | 31.85 | 61.23 |
| VIT_07s0031g02780.t01 | Wine grape | plastid | 62.59 | 61.22 |
| KRH53975 | Soybean | plastid | 61.2 | 60.77 |
| KRH59638 | Soybean | plastid | 61.2 | 60.69 |
| KRH40988 | Soybean | nucleus | 60.78 | 60.61 |
| KRH63959 | Soybean | plastid | 58.83 | 59.16 |
| GSMUA_Achr6P18920_001 | Banana | mitochondrion | 57.72 | 57.56 |
| Os03t0837900-01 | Rice | plastid | 56.88 | 56.65 |
| EER93131 | Sorghum | plastid | 56.47 | 56.62 |
| HORVU5Hr1G118480.8 | Barley | mitochondrion | 49.51 | 56.42 |
| TraesCS4A01G353400.1 | Wheat | plastid | 56.61 | 56.29 |
| TraesCS5B01G520700.1 | Wheat | plastid | 56.61 | 56.22 |
| Zm00001d034779_P001 | Maize | plastid | 56.61 | 54.93 |
| TraesCS5D01G519900.1 | Wheat | plastid | 56.61 | 53.91 |
| AT4G01650.1 | Thale cress | plastid | 7.93 | 19.79 |
Protein Annotations
| Gene3D:3.30.530.20 | MapMan:35.2 | EntrezGene:830772 | UniProt:A0A178UPZ6 | ProteinID:AED91341.1 | EMBL:AK117869 |
| ArrayExpress:AT5G08720 | EnsemblPlantsGene:AT5G08720 | RefSeq:AT5G08720 | TAIR:AT5G08720 | RefSeq:AT5G08720-TAIR-G | EnsemblPlants:AT5G08720.1 |
| TAIR:AT5G08720.1 | Unigene:At.45652 | EMBL:BT005959 | ProteinID:CAC35877.1 | InterPro:COQ10_START | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006139 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010239 | GO:GO:0010468 | GO:GO:0031426 | GO:GO:0042644 |
| GO:GO:0048027 | GO:GO:0048507 | InterPro:IPR023393 | RefSeq:NP_680157.1 | ProteinID:OAO96096.1 | PFAM:PF03364 |
| PO:PO:0000293 | PANTHER:PTHR34060 | PANTHER:PTHR34060:SF2 | UniProt:Q9C5A5 | SUPFAM:SSF55961 | InterPro:START-like_dom_sf |
| UniParc:UPI0000060DD2 | SEG:seg | : | : | : | : |
Description
At5g08720 [Source:UniProtKB/TrEMBL;Acc:Q9C5A5]
Coordinates
chr5:-:2841408..2845530
Molecular Weight (calculated)
81926.8 Da
IEP (calculated)
8.105
GRAVY (calculated)
-0.473
Length
719 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSKFPHLS HGVHTINFLN EPVFLSVLLP SPSRIRVFSS ISTSGIGGGV AKCHGTRHSG AGGRGDNGLR RDSGLGFDER GERKVRCEVD VISWRERRIR
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY
101: GEIWVDSDSQ SVWNVLTDYE RLADFIPNLV WSGRIPCPHP GRIWLEQRGL QRALYWHIEA RVVLDLHECL DSPNGRELHF SMVDGDFKKF EGKWSVKSGI
201: RSVGTVLSYE VNVIPRFNFP AIFLERIIRS DLPVNLRAVA RQAEKIYKDC GKPSIIEDLL GIISSQPAPS NGIEFDSLAT ERSVASSVGS LAHSNELNNN
301: WGVYGKACKL DKPCTVDEVH LRRFDGLLEN GGVHRCAVAS ITVKAPVCEV WKVLTSYESL PEIVPNLAIS KILSRDNNKV RILQEGCKGL LYMVLHARAV
401: LDLHEIREQE IRFEQVEGDF DSLEGKWIFE QLGSHHTLLK YTVESKMRKD SFLSEAIMEE VIYEDLPSNL CAIRDYIEKR GEKSSESCKL ETCQVSEETC
501: SSSRAKSVET VYNNDDGSDQ TKQRRRIPGL QRDIEVLKSE ILKFISEHGQ EGFMPMRKQL RLHGRVDIEK AITRMGGFRR IALMMNLSLA YKHRKPKGYW
601: DNLENLQEEI GRFQQSWGMD PSFMPSRKSF ERAGRYDIAR ALEKWGGLHE VSRLLALNVR HPNRQLNSRK DNGNTILRTE STEADLNSTV NKNNKPYVSQ
701: DTEKWLYNLK DLDINWVQY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.