Factsheet for Os12t0139400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0837900-01
Os07t0184900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G57040.1	Os07t0184900-01	AT1G16970.1	18642946
AT3G57040.1	Os03t0837900-01	AT5G08720.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0143300-02	Rice	cytosol	98.51	95.19
KXG27703	Sorghum	nucleus	79.6	79.21
VIT_13s0067g03480.t01	Wine grape	cytosol	46.27	75.61
VIT_13s0067g03450.t01	Wine grape	cytosol	52.24	75.0
VIT_13s0067g03490.t01	Wine grape	nucleus	54.23	74.66
TraesCS5D01G140200.1	Wheat	nucleus	77.11	67.1
PGSC0003DMT400007977	Potato	nucleus	54.23	66.87
TraesCS5B01G132900.2	Wheat	cytosol	77.11	66.81
TraesCS5A01G131600.2	Wheat	nucleus	77.11	65.13
CDY65526	Canola	cytosol	50.75	64.56
Solyc02g071220.2.1	Tomato	nucleus	52.74	63.86
KRH13391	Soybean	nucleus	56.72	63.69
HORVU5Hr1G043090.1	Barley	nucleus	77.11	63.52
KRH20737	Soybean	nucleus	56.22	63.13
VIT_13s0067g03460.t01	Wine grape	nucleus	50.25	61.96
KRH30056	Soybean	nucleus	56.22	60.43
Os04t0524300-01	Rice	cytosol, mitochondrion, nucleus, plastid	39.3	58.96
VIT_13s0067g03510.t01	Wine grape	nucleus	57.21	58.38
KRH62857	Soybean	nucleus	53.23	57.84
Zm00001d052476_P001	Maize	nucleus	34.83	57.38
KXG22820	Sorghum	endoplasmic reticulum	79.1	56.99
VIT_08s0007g05390.t01	Wine grape	nucleus	61.19	56.42
Zm00001d023242_P001	Maize	nucleus	38.31	55.4
PGSC0003DMT400076758	Potato	nucleus	62.19	55.31
VIT_13s0067g03430.t01	Wine grape	nucleus	59.7	54.55
PGSC0003DMT400076726	Potato	nucleus	60.7	53.98
Os02t0631700-01	Rice	plastid	39.3	53.74
PGSC0003DMT400007618	Potato	nucleus	57.21	53.74
CDY23856	Canola	nucleus	57.21	53.49
CDX79942	Canola	nucleus	57.21	53.49
Solyc10g079600.1.1	Tomato	nucleus	60.2	53.3
Bra004615.1-P	Field mustard	nucleus	56.72	53.27
KRG95133	Soybean	nucleus	65.17	53.25
KRH66808	Soybean	nucleus	65.17	52.82
CDY35419	Canola	nucleus	55.72	51.85
Bra000224.1-P	Field mustard	nucleus	55.72	51.85
CDY22518	Canola	nucleus	55.72	51.61
Solyc10g079700.1.1	Tomato	nucleus	60.7	51.05
AT2G41310.1	Thale cress	nucleus	56.72	50.67
Os01t0952500-01	Rice	cytosol	58.21	50.43
AT3G57040.1	Thale cress	nucleus	57.71	49.57
CDY06934	Canola	cytosol	54.23	49.1
Bra016943.1-P	Field mustard	cytosol	54.23	49.1
CDY14761	Canola	cytoskeleton, cytosol, nucleus	54.23	49.1
CDX76036	Canola	nucleus	54.73	48.89
Os08t0377200-01	Rice	cytosol	29.35	48.76
CDX67674	Canola	cytosol	56.22	48.29
Bra007295.1-P	Field mustard	cytosol	56.22	47.88
CDY06142	Canola	cytosol	55.22	47.03
Bra014649.1-P	Field mustard	nucleus	54.73	47.01
CDY30966	Canola	cytosol	54.23	46.98
CDX72077	Canola	cytosol	54.73	46.81
Bra003265.1-P	Field mustard	cytosol	55.72	46.67
Os08t0376700-01	Rice	cytosol	27.86	46.28
Os04t0673300-01	Rice	plastid	37.31	44.12
VIT_18s0001g02540.t01	Wine grape	nucleus	50.25	43.53
KRH53261	Soybean	nucleus	49.75	43.1
KRH64643	Soybean	nucleus	49.75	42.55
KRH18706	Soybean	nucleus	43.78	41.31
Os08t0358800-01	Rice	cytosol	25.37	37.78
AT2G07440.1	Thale cress	cytosol	25.37	37.5
Os07t0449700-01	Rice	cytosol, nucleus, plastid	38.31	37.38
Os04t0442300-01	Rice	cytosol	32.34	28.14
Os02t0557800-01	Rice	cytosol, golgi, nucleus	33.33	26.59

Protein Annotations

MapMan:11.4.2.5	Gene3D:3.40.50.2300	EntrezGene:4351462	EMBL:AB249660	ProteinID:ABA96406.2	ProteinID:BAF29137.2
ProteinID:BAT15827.1	InterPro:CheY-like_superfamily	ProteinID:EEE52746.1	ProteinID:FAA00261.1	GO:GO:0000160	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009736	GO:GO:0009987	InterPro:IPR001789	EnsemblPlantsGene:Os12g0139400	EnsemblPlants:Os12t0139400-01	PFAM:PF00072
PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF5	UniProt:Q2QXY3	SMART:SM00448	SUPFAM:SSF52172
InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI000069659E	RefSeq:XP_015619630.1	SEG:seg	:	:

Description

A-TYPE RESPONSE REGULATOR 10A-type response regulator, Cytokinin signaling (Os12t0139400-01)

Coordinates

chr12:+:1915773..1917702

Molecular Weight (calculated)

22591.6 Da

IEP (calculated)

6.232

GRAVY (calculated)

-0.599

Length

201 amino acids

Sequence
(BLAST)

001: MAVAIEAPFH VLAVDDSLPD RKLIERLLKT SSFQVTTVDS GSKALEFLGL HDHEDSPIST QSDQQEVGVN LIITDYCMPG MTGYDLLKKI KESSYLRDIP
101: VVIMSSDNIP SRINRCLEEG ADEFFLKPVR LSDMSKLKPH ILKSRCKEHY QQEQHLQSNS ESNNSSNPTS ENSSSSTSTN SHKRKAVDEE ILPHTIRPRH
201: S

Best Arabidopsis Sequence Match ( AT3G57040.1 )
(BLAST)

001: MGMAAESQFH VLAVDDSLFD RKLIERLLQK SSCQVTTVDS GSKALEFLGL RQSTDSNDPN AFSKAPVNHQ VVEVNLIITD YCMPGMTGYD LLKKVKESSA
101: FRDIPVVIMS SENVPARISR CLEEGAEEFF LKPVRLADLN KLKPHMMKTK LKNQKLEEIE TTSKVENGVP TAVADPEIKD STNIEIEILP LQQDLLLVQQ
201: EEQTLSINNK RKSVEEGIST DRARPRFDGI ATAV

Arabidopsis Description

ARR9Two-component response regulator ARR9 [Source:UniProtKB/Swiss-Prot;Acc:O80366]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.