Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G132900.2 | Wheat | cytosol | 96.97 | 96.55 |
| TraesCS5A01G131600.2 | Wheat | nucleus | 95.24 | 92.44 |
| HORVU5Hr1G043090.1 | Barley | nucleus | 93.51 | 88.52 |
| Os12t0139400-01 | Rice | nucleus | 67.1 | 77.11 |
| Os11t0143300-02 | Rice | cytosol | 67.53 | 75.0 |
| KXG27703 | Sorghum | nucleus | 65.37 | 74.75 |
| VIT_13s0067g03480.t01 | Wine grape | cytosol | 38.96 | 73.17 |
| VIT_13s0067g03490.t01 | Wine grape | nucleus | 45.89 | 72.6 |
| VIT_13s0067g03450.t01 | Wine grape | cytosol | 43.72 | 72.14 |
| CDY65526 | Canola | cytosol | 44.16 | 64.56 |
| PGSC0003DMT400007977 | Potato | nucleus | 44.59 | 63.19 |
| KRH13391 | Soybean | nucleus | 48.05 | 62.01 |
| KRH20737 | Soybean | nucleus | 47.62 | 61.45 |
| Solyc02g071220.2.1 | Tomato | nucleus | 43.29 | 60.24 |
| TraesCS2D01G374300.1 | Wheat | cytosol | 35.06 | 60.0 |
| KRH30056 | Soybean | nucleus | 46.75 | 57.75 |
| VIT_13s0067g03460.t01 | Wine grape | nucleus | 40.69 | 57.67 |
| VIT_13s0067g03510.t01 | Wine grape | nucleus | 48.05 | 56.35 |
| Zm00001d052476_P001 | Maize | nucleus | 29.44 | 55.74 |
| KRH62857 | Soybean | nucleus | 44.16 | 55.14 |
| Zm00001d023242_P001 | Maize | nucleus | 32.9 | 54.68 |
| KXG22820 | Sorghum | endoplasmic reticulum | 65.37 | 54.12 |
| VIT_08s0007g05390.t01 | Wine grape | nucleus | 50.22 | 53.21 |
| PGSC0003DMT400076758 | Potato | nucleus | 51.95 | 53.1 |
| CDX79942 | Canola | nucleus | 49.35 | 53.02 |
| Solyc10g079600.1.1 | Tomato | nucleus | 51.95 | 52.86 |
| Bra004615.1-P | Field mustard | nucleus | 48.92 | 52.8 |
| PGSC0003DMT400076726 | Potato | nucleus | 51.52 | 52.65 |
| CDY23856 | Canola | nucleus | 48.92 | 52.56 |
| CDY35419 | Canola | nucleus | 48.92 | 52.31 |
| Bra000224.1-P | Field mustard | nucleus | 48.92 | 52.31 |
| CDY22518 | Canola | nucleus | 48.92 | 52.07 |
| TraesCS6D01G213700.2 | Wheat | plastid | 33.33 | 52.03 |
| PGSC0003DMT400007618 | Potato | nucleus | 48.05 | 51.87 |
| VIT_13s0067g03430.t01 | Wine grape | nucleus | 48.48 | 50.91 |
| CDY14761 | Canola | cytoskeleton, cytosol, nucleus | 48.92 | 50.9 |
| CDY06934 | Canola | cytosol | 48.92 | 50.9 |
| Bra016943.1-P | Field mustard | cytosol | 48.92 | 50.9 |
| AT2G41310.1 | Thale cress | nucleus | 49.35 | 50.67 |
| CDX76036 | Canola | nucleus | 49.35 | 50.67 |
| KRH66808 | Soybean | nucleus | 53.25 | 49.6 |
| KRG95133 | Soybean | nucleus | 52.81 | 49.59 |
| AT3G57040.1 | Thale cress | nucleus | 50.22 | 49.57 |
| Solyc10g079700.1.1 | Tomato | nucleus | 50.65 | 48.95 |
| Bra014649.1-P | Field mustard | nucleus | 49.35 | 48.72 |
| CDY30966 | Canola | cytosol | 48.92 | 48.71 |
| Bra007295.1-P | Field mustard | cytosol | 49.35 | 48.31 |
| CDY06142 | Canola | cytosol | 49.35 | 48.31 |
| CDX72077 | Canola | cytosol | 48.92 | 48.09 |
| CDX67674 | Canola | cytosol | 48.05 | 47.44 |
| Bra003265.1-P | Field mustard | cytosol | 48.92 | 47.08 |
| TraesCS2D01G552200.1 | Wheat | plastid | 35.06 | 46.02 |
| KRH53261 | Soybean | nucleus | 44.59 | 44.4 |
| KRH64643 | Soybean | nucleus | 44.59 | 43.83 |
| VIT_18s0001g02540.t01 | Wine grape | nucleus | 43.72 | 43.53 |
| TraesCS6D01G401600.1 | Wheat | plastid | 35.93 | 42.78 |
| KRH18706 | Soybean | nucleus | 38.1 | 41.31 |
| TraesCS3D01G494600.1 | Wheat | nucleus | 48.05 | 41.26 |
| AT2G07440.1 | Thale cress | cytosol | 22.94 | 38.97 |
| TraesCS2D01G308000.1 | Wheat | cytosol | 30.74 | 32.27 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G140200.1 | EnsemblPlantsGene:TraesCS5D01G140200 | Gene3D:3.40.50.2300 | GO:GO:0000160 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009987 | InterPro:CheY-like_superfamily | InterPro:IPR001789 | InterPro:Sig_transdc_resp-reg_receiver | PANTHER:PTHR43874 |
| PANTHER:PTHR43874:SF5 | PFAM:PF00072 | PFscan:PS50110 | SEG:seg | SMART:SM00448 | SUPFAM:SSF52172 |
| TIGR:cd00156 | MapMan:11.4.2.5 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:223887718..223889250
Molecular Weight (calculated)
25365.6 Da
IEP (calculated)
4.865
GRAVY (calculated)
-0.475
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVAIAEAPF HVLAVDDSVL DRKLIERLLK TSSFQVTTVD SGTKALEFLG LHDEDASISS VHADQLDVEV NVNLIITDYC MPGMTGYDLL KKIKESSSFR
101: DIPVVIMSSE NIPSRINRCL EEGANEFFLK PVRLSDMSKL KPHIMKSRCK EHCHQDEDLL SNSETNPTNN SSSSSDTITI SSSNPMDNSS GDTISSSNPT
201: DNSSGDSSNI RKRKAADDEI LTKTSRPNHN C
101: DIPVVIMSSE NIPSRINRCL EEGANEFFLK PVRLSDMSKL KPHIMKSRCK EHCHQDEDLL SNSETNPTNN SSSSSDTITI SSSNPMDNSS GDTISSSNPT
201: DNSSGDSSNI RKRKAADDEI LTKTSRPNHN C
001: MVMETESKFH VLAVDDSLFD RKMIERLLQK SSCQVTTVDS GSKALEFLGL RVDDNDPNAL STSPQIHQEV EINLIITDYC MPGMTGYDLL KKVKESAAFR
101: SIPVVIMSSE NVPARISRCL EEGAEEFFLK PVKLADLTKL KPHMMKTKLK KESEKPVAIE EIVVSKPEIE EEEEESSVIE ILPLHQEIES EQLEPMLSSN
201: KRKAMEEVVS TDRSRPKYND ITTSV
101: SIPVVIMSSE NVPARISRCL EEGAEEFFLK PVKLADLTKL KPHMMKTKLK KESEKPVAIE EIVVSKPEIE EEEEESSVIE ILPLHQEIES EQLEPMLSSN
201: KRKAMEEVVS TDRSRPKYND ITTSV
Arabidopsis Description
ARR8Two-component response regulator ARR8 [Source:UniProtKB/Swiss-Prot;Acc:O80365]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.