Factsheet for VIT_05s0062g01170.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
nucleus 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g05390.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16970.1	VIT_08s0007g05390.t01	AT3G57040.1	18642946

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036518	Potato	mitochondrion	36.76	80.07
Solyc09g098230.2.1	Tomato	nucleus	75.92	75.8
GSMUA_Achr4P17790_001	Banana	nucleus	22.63	72.68
KRG93118	Soybean	nucleus	73.68	72.4
AT1G16970.1	Thale cress	nucleus	70.79	71.01
Bra026012.1-P	Field mustard	nucleus	65.65	70.88
TraesCS5B01G057400.1	Wheat	nucleus	68.22	67.89
TraesCS5A01G051500.1	Wheat	nucleus	68.06	67.73
TraesCS5D01G062500.2	Wheat	nucleus	68.06	67.73
CDY35134	Canola	nucleus	65.97	67.71
CDY40008	Canola	nucleus	66.45	67.65
HORVU5Hr1G012090.2	Barley	nucleus	67.9	67.36
GSMUA_Achr4P17800_001	Banana	nucleus	48.15	67.26
EER95967	Sorghum	nucleus	67.74	67.2
EER97823	Sorghum	nucleus	67.58	67.04
Os07t0184900-01	Rice	nucleus	67.09	66.99
KRH36355	Soybean	mitochondrion, nucleus	18.46	63.54
Zm00001d007807_P006	Maize	nucleus	63.88	58.88

Protein Annotations

Gene3D:1.10.1600.10	Gene3D:1.10.720.30	EntrezGene:100265198	wikigene:100265198	MapMan:14.4.1.1	Gene3D:2.40.290.10
Gene3D:3.40.50.410	Gene3D:4.10.970.10	ProteinID:CBI39448	ProteinID:CBI39448.3	UniProt:D7U9N4	EMBL:FN596745
GO:GO:0000723	GO:GO:0000784	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0003690	GO:GO:0003824	GO:GO:0004003	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006303
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009628	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0032508	GO:GO:0042162	GO:GO:0043564	InterPro:IPR003034
InterPro:IPR016194	InterPro:IPR027388	InterPro:IPR036361	InterPro:IPR036465	InterPro:Ku70	InterPro:Ku70/Ku80_beta-barrel_dom
InterPro:Ku70_bridge/pillars_dom_sf	InterPro:Ku_C	InterPro:Ku_N	EntrezGene:LOC100265198	wikigene:LOC100265198	PFAM:PF02735
PFAM:PF03730	PFAM:PF03731	PIRSF:PIRSF003033	PFscan:PS50800	PANTHER:PTHR12604	PANTHER:PTHR12604:SF2
InterPro:SAP_dom	InterPro:SAP_dom_sf	SMART:SM00513	SMART:SM00559	InterPro:SPOC-like_C_dom_sf	SUPFAM:SSF100939
SUPFAM:SSF53300	SUPFAM:SSF68906	TIGR:TC65914	TIGRFAMs:TIGR00578	UniParc:UPI00019833BC	ArrayExpress:VIT_05s0062g01170
EnsemblPlantsGene:VIT_05s0062g01170	EnsemblPlants:VIT_05s0062g01170.t01	unigene:Vvi.5176	RefSeq:XP_002267875	RefSeq:XP_002267875.1	SEG:seg
InterPro:vWFA_dom_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:19895404..19909491

Molecular Weight (calculated)

70229.9 Da

IEP (calculated)

5.479

GRAVY (calculated)

-0.377

Length

623 amino acids

Sequence
(BLAST)

001: MDLDPDDIFK DDEDDPDNDL EKASTKEFVV YLVDASPKMF STTFQGEDQK DETPFHAAVS CISQSLKTQI INNSNDEVAI CFFNTREKKN LQDLNGVFVF
101: NVAEREYLDR PTARLIKEFD RIEELFMKEI GSQYGIMSGS RENSLYNALW AAQALLRKGS AKTADKRILL FTNEDDPFGS ITGATKMDMT RTTLQRAKDT
201: QDLGISIELL PLSCPDEEFN VSAFYADLIG LEGDDLALFM PSVGDKLTDM KNQLRKRMFK KRVVRRITFS IVKGLSIELN TYALIRPTVP GTITWLDSIT
301: NLPLKTERSF ICADTGALVQ PTKRFHPYKN KNVKFTTEEL SEVKRISTGH LRLLGFKPLS CLKDYHNLRP STFVFPTDKE VVGSTCIFIA LHRSMLRLKR
401: FAVAFYGGSA HPQLVALVAQ DEIIAGGVQV EPPGMHMIYL PYSDDIRHIE ELHSDITVPT PRATDDQIKK ATALMRRIDL KDFSVCQFAN PALQRHYAVL
501: QALALEEDEM PEIKDETLPD EEGMARPGVV NALEEFKKSV YGENYNEEDE GHGKASDASK KRKAVAENAV KESAKYDWAD LADNGRLKDL TTVELKYYLT
601: AHNLAVGGKK EVLISRILTH MGK

Best Arabidopsis Sequence Match ( AT1G16970.1 )
(BLAST)

001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K

Arabidopsis Description

KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.