Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH36355 | Soybean | mitochondrion, nucleus | 44.85 | 48.07 |
PGSC0003DMT400036518 | Potato | mitochondrion | 70.1 | 47.55 |
VIT_05s0062g01170.t01 | Wine grape | nucleus | 72.68 | 22.63 |
Solyc09g098230.2.1 | Tomato | nucleus | 68.04 | 21.15 |
TraesCS5D01G062500.2 | Wheat | nucleus | 67.53 | 20.93 |
TraesCS5B01G057400.1 | Wheat | nucleus | 67.53 | 20.93 |
TraesCS5A01G051500.1 | Wheat | nucleus | 67.53 | 20.93 |
HORVU5Hr1G012090.2 | Barley | nucleus | 67.53 | 20.86 |
Os07t0184900-01 | Rice | nucleus | 67.01 | 20.83 |
EER95967 | Sorghum | nucleus | 67.01 | 20.7 |
EER97823 | Sorghum | nucleus | 66.49 | 20.54 |
KRG93118 | Soybean | nucleus | 64.95 | 19.87 |
Bra026012.1-P | Field mustard | nucleus | 57.22 | 19.24 |
Zm00001d007807_P006 | Maize | nucleus | 65.98 | 18.93 |
AT1G16970.1 | Thale cress | nucleus | 58.76 | 18.36 |
CDY40008 | Canola | nucleus | 53.61 | 16.99 |
CDY35134 | Canola | nucleus | 52.58 | 16.8 |
GSMUA_Achr4P17800_001 | Banana | nucleus | 3.09 | 1.35 |
Protein Annotations
Gene3D:1.10.1600.10 | Gene3D:1.10.720.30 | MapMan:14.4.1.1 | GO:GO:0000723 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006303 |
GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
GO:GO:0032508 | GO:GO:0042162 | GO:GO:0043564 | EnsemblPlantsGene:GSMUA_Achr4G17790_001 | EnsemblPlants:GSMUA_Achr4P17790_001 | EnsemblPlants:GSMUA_Achr4T17790_001 |
InterPro:IPR003034 | InterPro:IPR016194 | InterPro:IPR036361 | InterPro:Ku70 | InterPro:Ku_C | UniProt:M0SPU2 |
PFAM:PF02037 | PFAM:PF03730 | PFscan:PS50800 | PANTHER:PTHR12604 | PANTHER:PTHR12604:SF2 | InterPro:SAP_dom |
InterPro:SAP_dom_sf | SMART:SM00513 | InterPro:SPOC-like_C_dom_sf | SUPFAM:SSF100939 | SUPFAM:SSF68906 | UniParc:UPI000295BB04 |
Description
ATP-dependent DNA helicase 2 subunit KU70 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17790_001]
Coordinates
chr4:-:18032993..18036171
Molecular Weight (calculated)
22109.1 Da
IEP (calculated)
5.046
GRAVY (calculated)
-0.626
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MIYLPYSDDI RHVEEACRLH RTDDAIAPRA TDDQIKKASA LMRRIDLKDF SVCQFANPAL QRHYGILQAL ALDEDEMPDI KDETLPDEEG LARPGVVRVL
101: EEFKIAVYGE NHDQEEADSM SMRGSRSEAS RKRKEMAETA ERESSRYNWA DLAESGQLKD LTVIELKYYL TAHNLSVTGK KEALISRILT HLGK
101: EEFKIAVYGE NHDQEEADSM SMRGSRSEAS RKRKEMAETA ERESSRYNWA DLAESGQLKD LTVIELKYYL TAHNLSVTGK KEALISRILT HLGK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.