Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc10g079600.1.1 | |
| Solyc10g079700.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16970.1 | Solyc10g079600.1.1 | AT3G57040.1 | 18642946 |
| AT1G16970.1 | Solyc10g079700.1.1 | AT3G57040.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400036518 | Potato | mitochondrion | 43.43 | 94.76 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 75.8 | 75.92 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 21.15 | 68.04 |
| KRG93118 | Soybean | nucleus | 68.91 | 67.82 |
| Bra026012.1-P | Field mustard | nucleus | 61.38 | 66.38 |
| AT1G16970.1 | Thale cress | nucleus | 66.03 | 66.34 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 65.87 | 65.66 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 65.71 | 65.5 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 65.71 | 65.5 |
| Os07t0184900-01 | Rice | nucleus | 65.06 | 65.06 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 65.38 | 64.97 |
| CDY40008 | Canola | nucleus | 63.62 | 64.87 |
| EER95967 | Sorghum | nucleus | 65.22 | 64.81 |
| CDY35134 | Canola | nucleus | 62.98 | 64.74 |
| GSMUA_Achr4P17800_001 | Banana | nucleus | 45.35 | 63.45 |
| EER97823 | Sorghum | nucleus | 63.62 | 63.22 |
| KRH36355 | Soybean | mitochondrion, nucleus | 17.47 | 60.22 |
| Zm00001d007807_P006 | Maize | nucleus | 60.58 | 55.92 |
Protein Annotations
Description
ATP-dependent DNA helicase 2 subunit KU70 [Source:Projected from Arabidopsis thaliana (AT1G16970) UniProtKB/Swiss-Prot;Acc:Q9FQ08]
Coordinates
chr9:-:72077172..72091620
Molecular Weight (calculated)
71180.9 Da
IEP (calculated)
5.112
GRAVY (calculated)
-0.436
Length
624 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMDLDPDEV FRDDEDDPEN EFFKERDNTK EFLVYLVDAS PKMFSSTCPT DDEKIATHFQ VAVSSIAQSL RTQIINRSYD EVSICFFNTR GKKNLQDLSG
101: VYVFNVRERE DLDRPTARLI KEFDQIEERF EKEIGSKYGI VPGSRDNSLY NALWVAQALL RKGSAKTADK RILLLTNEDD PFGNLKGVIK VDMMRTTMQR
201: AKDAQDLGIT IELLPLSRPD DEFNVSLFYA DLLGLEGDDL AQFKALIGER FEDLNDQLRK RMFKKRRVRR LRLVIFNGLS IELNTYALIR PTNPGTITWL
301: DSMTNLPLKT ERTFICADTG AIVQEPLKRF QSYKNENVIF SADELSEVKR VSTGHLRLLG FKPLSCLKDY HNLKPATFVF PSDEEVVGST CLFVALQRSM
401: LRLKRFAVAF YGNLSHPQLV ALVAQDEVMT PSGQVEPPGM HLIYLPYSDD IRHVEELHTD PNSVPHATDD QIKKASALVR RIDLKDFSVW QFANPALQRH
501: YAVLQALALD EDEMPEIKDE TLPDEEGMAR PGIVKALEEF KLSVYGESYK DEDSNIEGKA EPTRKRKANA IKEYGNYEWA DLADNGKLKD MTVVELKYYL
601: GAHDLPVSGK KEALISRILT HMGK
101: VYVFNVRERE DLDRPTARLI KEFDQIEERF EKEIGSKYGI VPGSRDNSLY NALWVAQALL RKGSAKTADK RILLLTNEDD PFGNLKGVIK VDMMRTTMQR
201: AKDAQDLGIT IELLPLSRPD DEFNVSLFYA DLLGLEGDDL AQFKALIGER FEDLNDQLRK RMFKKRRVRR LRLVIFNGLS IELNTYALIR PTNPGTITWL
301: DSMTNLPLKT ERTFICADTG AIVQEPLKRF QSYKNENVIF SADELSEVKR VSTGHLRLLG FKPLSCLKDY HNLKPATFVF PSDEEVVGST CLFVALQRSM
401: LRLKRFAVAF YGNLSHPQLV ALVAQDEVMT PSGQVEPPGM HLIYLPYSDD IRHVEELHTD PNSVPHATDD QIKKASALVR RIDLKDFSVW QFANPALQRH
501: YAVLQALALD EDEMPEIKDE TLPDEEGMAR PGIVKALEEF KLSVYGESYK DEDSNIEGKA EPTRKRKANA IKEYGNYEWA DLADNGKLKD MTVVELKYYL
601: GAHDLPVSGK KEALISRILT HMGK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.