Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G16970.1 | KRG95133 | AT3G57040.1 | 18642946 |
| AT1G16970.1 | KRH66808 | AT3G57040.1 | 18642946 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH36355 | Soybean | mitochondrion, nucleus | 23.97 | 83.98 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 72.4 | 73.68 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 32.18 | 71.33 |
| Solyc09g098230.2.1 | Tomato | nucleus | 67.82 | 68.91 |
| Bra026012.1-P | Field mustard | nucleus | 59.94 | 65.86 |
| AT1G16970.1 | Thale cress | nucleus | 63.72 | 65.06 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 19.87 | 64.95 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 63.56 | 64.38 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 63.25 | 64.06 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 63.09 | 63.9 |
| Os07t0184900-01 | Rice | nucleus | 62.78 | 63.78 |
| CDY35134 | Canola | nucleus | 60.73 | 63.43 |
| CDY40008 | Canola | nucleus | 61.2 | 63.4 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 62.3 | 62.9 |
| EER97823 | Sorghum | nucleus | 61.36 | 61.94 |
| EER95967 | Sorghum | nucleus | 61.36 | 61.94 |
| GSMUA_Achr4P17800_001 | Banana | nucleus | 43.53 | 61.88 |
| Zm00001d007807_P006 | Maize | nucleus | 56.94 | 53.4 |
Protein Annotations
Description
hypothetical protein
Coordinates
chr20:+:47775695..47788671
Molecular Weight (calculated)
71731.2 Da
IEP (calculated)
4.752
GRAVY (calculated)
-0.391
Length
634 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLDGDDNDN DIFRDDEDDP QAQLSLLENE SSKEYVVYLV DASPKMFSTT CPAEEDDQNG ETHFHIAISC ISQTLESQII NRSYDQVAIC FFNTREKNNL
101: QDLNSVFVFN VPEREFLDRP TARLIKEFYQ LEESFSKIIG SQHGIVSGTR ENSLYNAIWA AQALLRKGSA KTVDKRILLF TNDDDPFGSI KGAVKSDMTR
201: MTLQRAKDAQ DLGISIELLP LSHPDEVFNV SQFYADLIGL EGDDLVDFMP SAGKKLEDMK DQLRKRMFTK RIVKRLKFMI VNGISIELNS YALIRPTVPG
301: AITWLDSVTN HPLKIERTFI CVDTGALVEE PTKRFLPYKN QNIIFSMKQL SEIKRVSTGH LHLLGFKPLS CLRDYYNLKP STFLYPSDEG TDSSMCMFIA
401: LHRSMIQLNR FAVAFSGSSS RPQLVALIAQ EEVIQSGGQI EPPGMHMIYL PYSDDIRFVE ERYSDTSGMV NIASDDQIKK AANLIKRIDL KDFSVCQISN
501: PALQRHYAVL QALALEEDDI PEMKDESLPD EEGLARPGVV RALEEFKTSV YGDNYDEENE PGTEKPTEAS KKRKANAEFA TKECENYDWG DLADTGKLKD
601: LTVVELKYYL TAHNLPVSGK KEAIISRILT HMAK
101: QDLNSVFVFN VPEREFLDRP TARLIKEFYQ LEESFSKIIG SQHGIVSGTR ENSLYNAIWA AQALLRKGSA KTVDKRILLF TNDDDPFGSI KGAVKSDMTR
201: MTLQRAKDAQ DLGISIELLP LSHPDEVFNV SQFYADLIGL EGDDLVDFMP SAGKKLEDMK DQLRKRMFTK RIVKRLKFMI VNGISIELNS YALIRPTVPG
301: AITWLDSVTN HPLKIERTFI CVDTGALVEE PTKRFLPYKN QNIIFSMKQL SEIKRVSTGH LHLLGFKPLS CLRDYYNLKP STFLYPSDEG TDSSMCMFIA
401: LHRSMIQLNR FAVAFSGSSS RPQLVALIAQ EEVIQSGGQI EPPGMHMIYL PYSDDIRFVE ERYSDTSGMV NIASDDQIKK AANLIKRIDL KDFSVCQISN
501: PALQRHYAVL QALALEEDDI PEMKDESLPD EEGLARPGVV RALEEFKTSV YGDNYDEENE PGTEKPTEAS KKRKANAEFA TKECENYDWG DLADTGKLKD
601: LTVVELKYYL TAHNLPVSGK KEAIISRILT HMAK
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Arabidopsis Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.