Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026012.1-P | Field mustard | nucleus | 83.09 | 89.43 |
| CDY35134 | Canola | nucleus | 86.15 | 88.14 |
| CDY40008 | Canola | nucleus | 85.83 | 87.09 |
| VIT_05s0062g01170.t01 | Wine grape | nucleus | 71.01 | 70.79 |
| PGSC0003DMT400036518 | Potato | mitochondrion | 30.6 | 66.43 |
| Solyc09g098230.2.1 | Tomato | nucleus | 66.34 | 66.03 |
| KRG93118 | Soybean | nucleus | 65.06 | 63.72 |
| Os07t0184900-01 | Rice | nucleus | 61.51 | 61.22 |
| EER95967 | Sorghum | nucleus | 61.67 | 60.99 |
| TraesCS5B01G057400.1 | Wheat | nucleus | 61.19 | 60.7 |
| TraesCS5D01G062500.2 | Wheat | nucleus | 61.19 | 60.7 |
| EER97823 | Sorghum | nucleus | 61.35 | 60.67 |
| TraesCS5A01G051500.1 | Wheat | nucleus | 61.03 | 60.54 |
| HORVU5Hr1G012090.2 | Barley | nucleus | 60.55 | 59.87 |
| GSMUA_Achr4P17790_001 | Banana | nucleus | 18.36 | 58.76 |
| GSMUA_Achr4P17800_001 | Banana | nucleus | 41.71 | 58.07 |
| Zm00001d007807_P006 | Maize | nucleus | 57.81 | 53.11 |
| KRH36355 | Soybean | mitochondrion, nucleus | 14.65 | 50.28 |
Protein Annotations
| Gene3D:1.10.1600.10 | Gene3D:1.10.720.30 | MapMan:14.4.1.1 | Gene3D:2.40.290.10 | Gene3D:3.40.50.410 | Gene3D:4.10.970.10 |
| EntrezGene:838268 | UniProt:A0A178WAS1 | ProteinID:AAF99835.1 | ProteinID:AEE29527.1 | EMBL:AF283759 | EMBL:AK221642 |
| ArrayExpress:AT1G16970 | EnsemblPlantsGene:AT1G16970 | RefSeq:AT1G16970 | TAIR:AT1G16970 | RefSeq:AT1G16970-TAIR-G | EnsemblPlants:AT1G16970.1 |
| TAIR:AT1G16970.1 | Unigene:At.22247 | GO:GO:0000166 | GO:GO:0000723 | GO:GO:0000784 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0003690 | GO:GO:0003824 | GO:GO:0004003 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006281 |
| GO:GO:0006303 | GO:GO:0006310 | GO:GO:0006950 | GO:GO:0006974 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009408 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 |
| GO:GO:0042162 | GO:GO:0043564 | InterPro:IPR003034 | InterPro:IPR016194 | InterPro:IPR027388 | InterPro:IPR036361 |
| InterPro:IPR036465 | Symbol:KU70 | InterPro:Ku70 | InterPro:Ku70/Ku80_beta-barrel_dom | InterPro:Ku70_bridge/pillars_dom_sf | InterPro:Ku_C |
| InterPro:Ku_N | RefSeq:NP_564012.1 | ProteinID:OAP15286.1 | PFAM:PF02037 | PFAM:PF02735 | PFAM:PF03730 |
| PFAM:PF03731 | PIRSF:PIRSF003033 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007017 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50800 |
| PANTHER:PTHR12604 | PANTHER:PTHR12604:SF2 | UniProt:Q9FQ08 | InterPro:SAP_dom | InterPro:SAP_dom_sf | SMART:SM00513 |
| SMART:SM00559 | InterPro:SPOC-like_C_dom_sf | SUPFAM:SSF100939 | SUPFAM:SSF53300 | SUPFAM:SSF68906 | TIGRFAMs:TIGR00578 |
| UniParc:UPI00000A6CF9 | SEG:seg | InterPro:vWFA_dom_sf | : | : | : |
Description
KU70KU70 [Source:UniProtKB/TrEMBL;Acc:A0A178WAS1]
Coordinates
chr1:-:5800767..5805811
Molecular Weight (calculated)
70294.8 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.442
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDPDDVFR DEDEDPENDF FQEKEASKEF VVYLIDASPK MFCSTCPSEE EDKQESHFHI AVSCIAQSLK AHIINRSNDE IAICFFNTRE KKNLQDLNGV
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
101: YVFNVPERDS IDRPTARLIK EFDLIEESFD KEIGSQTGIV SDSRENSLYS ALWVAQALLR KGSLKTADKR MFLFTNEDDP FGSMRISVKE DMTRTTLQRA
201: KDAQDLGISI ELLPLSQPDK QFNITLFYKD LIGLNSDELT EFMPSVGQKL EDMKDQLKKR VLAKRIAKRI TFVICDGLSI ELNGYALLRP AIPGSITWLD
301: STTNLPVKVE RSYICTDTGA IMQDPIQRIQ PYKNQNIMFT VEELSQVKRI STGHLRLLGF KPLSCLKDYH NLKPSTFLYP SDKEVIGSTR AFIALHRSMI
401: QLERFAVAFY GGTTPPRLVA LVAQDEIESD GGQVEPPGIN MIYLPYANDI RDIDELHSKP GVAAPRASDD QLKKASALMR RLELKDFSVC QFANPALQRH
501: YAILQAIALD ENELRETRDE TLPDEEGMNR PAVVKAIEQF KQSIYGDDPD EESDSGAKEK SKKRKAGDAD DGKYDYIELA KTGKLKDLTV VELKTYLTAN
601: NLLVSGKKEV LINRILTHIG K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.