Factsheet for VIT_13s0067g03070.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53721	Soybean	cytosol	67.97	76.47
Bra014695.1-P	Field mustard	cytosol	63.4	76.38
CDX72141	Canola	cytosol	63.4	76.38
CDY71200	Canola	cytosol	63.4	76.38
CDY59626	Canola	cytosol	63.4	76.38
Solyc06g048930.2.1	Tomato	cytosol, nucleus, plastid	73.86	76.35
CDX75990	Canola	cytosol	62.75	75.59
PGSC0003DMT400042922	Potato	cytosol	72.55	75.0
KRH64213	Soybean	cytosol	70.59	73.97
AT3G56380.2	Thale cress	cytosol, nucleus, plastid	71.9	71.43
CDY22469	Canola	cytosol	69.28	67.09
Bra000199.1-P	Field mustard	cytosol	70.59	67.08
CDY35445	Canola	cytosol	70.59	67.08
PGSC0003DMT400070964	Potato	cytosol, nucleus, plastid	67.32	66.03
Solyc06g048600.2.1	Tomato	cytosol, nucleus, plastid	66.01	64.74
AT2G40670.2	Thale cress	cytosol	69.28	64.24
CDY27219	Canola	cytosol, nucleus, plastid	67.97	61.54
Bra007242.1-P	Field mustard	cytosol, nucleus, plastid	67.97	61.54
VIT_13s0067g03480.t01	Wine grape	cytosol	47.71	59.35
VIT_13s0067g03490.t01	Wine grape	nucleus	54.9	57.53
VIT_13s0067g03450.t01	Wine grape	cytosol	52.29	57.14
VIT_13s0067g03460.t01	Wine grape	nucleus	50.98	47.85
VIT_13s0067g03510.t01	Wine grape	nucleus	56.21	43.65
VIT_08s0007g05390.t01	Wine grape	nucleus	55.56	38.99
VIT_01s0026g00940.t01	Wine grape	nucleus	54.9	38.01
VIT_13s0067g03430.t01	Wine grape	nucleus	54.25	37.73
VIT_18s0001g02540.t01	Wine grape	nucleus	54.9	36.21
VIT_17s0000g07580.t01	Wine grape	cytosol, nucleus, plastid	52.94	31.4

Protein Annotations

EntrezGene:100246693	wikigene:100246693	MapMan:11.4.2.5	Gene3D:3.40.50.2300	ProteinID:ACO88943	ProteinID:ACO88943.1
EMBL:AM435492	ProteinID:CAN60564	ProteinID:CAN60564.1	ProteinID:CCB49783	ProteinID:CCB49783.1	InterPro:CheY-like_superfamily
UniProt:F6HC71	EMBL:FJ822982	EMBL:FN595514	GO:GO:0000160	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789
PFAM:PF00072	PFscan:PS50110	PANTHER:PTHR43874	PANTHER:PTHR43874:SF2	EntrezGene:RRA3	wikigene:RRA3
SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	TIGR:TC65650	UniParc:UPI00015CAC6E	ArrayExpress:VIT_13s0067g03070
EnsemblPlantsGene:VIT_13s0067g03070	EnsemblPlants:VIT_13s0067g03070.t01	unigene:Vvi.6868	RefSeq:XP_002280746	RefSeq:XP_002280746.1	SEG:seg

Description

No Description!

Coordinates

chr13:+:1666120..1668610

Molecular Weight (calculated)

17200.1 Da

IEP (calculated)

8.314

GRAVY (calculated)

-0.279

Length

153 amino acids

Sequence
(BLAST)

001: MDAASSSSAN DMMVMDYGDE PHVLAVDDNL IDRKLIEKLL KNFSCRVTTA ENGLRALEYL GLGDNQQTSH KASVSKVNLI ITDYCMPGMT GYELLKRVKQ
101: SSILKEVPVV IMSSENIPTR INKCLEEGAQ MFMLKPLKQS DVKKLRCYLK HRS

Best Arabidopsis Sequence Match ( AT3G56380.1 )
(BLAST)

001: MNKGCGSGSD SCLSSMEEEL HVLAVDDNLI DRKLVERILK ISSCKVTTAE NGLRALEYLG LGDPQQTDSL TNVMKVNLII TDYCMPGMTG FELLKKVKES
101: SNLKEVPVVI LSSENIPTRI NKCLASGAQM FMQKPLKLSD VEKLKCHLLN CRS

Arabidopsis Description

ARR17Response regulator 17 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQB0]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.