Factsheet for Bra018439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001650.1-P
Bra003295.1-P
Bra004940.1-P
Bra007346.1-P
Bra007589.1-P
Bra022192.1-P
Bra023876.1-P
Bra025394.1-P
Bra036215.1-P
Bra039311.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10470.1	Bra001650.1-P	AT2G18790.1	11691995
AT1G10470.1	Bra022192.1-P	AT2G18790.1	11691995
AT1G10470.1	Bra004940.1-P	AT2G45820.1	9771897
AT1G10470.1	Bra039311.1-P	AT2G45820.1	9771897
AT1G10470.1	Bra023876.1-P	AT3G21510.1	10930573
AT1G10470.1	Bra023876.1-P	AT3G21510.1	16965536
AT1G10470.1	Bra025394.1-P	AT3G29350.1	16965536
AT1G10470.1	Bra036215.1-P	AT3G29350.1	16965536
AT1G10470.1	Bra003295.1-P	AT3G57670.1	18642946
AT1G10470.1	Bra007346.1-P	AT3G57670.1	18642946
AT1G10470.1	Bra007589.1-P	AT3G61260.1	9771897

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20948	Canola	nucleus	99.6	98.81
CDY20630	Canola	nucleus	94.42	95.95
Bra036963.1-P	Field mustard	nucleus	87.25	83.91
Bra031714.1-P	Field mustard	nucleus	87.25	83.91
AT1G10470.1	Thale cress	nucleus	86.45	83.78
Bra019932.1-P	Field mustard	nucleus	80.88	80.24
Bra027829.1-P	Field mustard	nucleus	68.92	76.55
Bra018084.1-P	Field mustard	cytosol, nucleus, plastid	42.63	59.78
Bra033773.1-P	Field mustard	nucleus	42.23	58.89
PGSC0003DMT400058306	Potato	nucleus	57.77	58.47
Solyc05g006420.2.1	Tomato	nucleus	57.37	57.37
VIT_01s0026g00940.t01	Wine grape	nucleus	49.8	56.56
KRH45761	Soybean	nucleus	50.2	56.5
KRG99225	Soybean	nucleus	49.4	55.86
KRH69443	Soybean	nucleus	52.99	55.42
KRH74701	Soybean	nucleus	53.78	55.33
Bra010132.1-P	Field mustard	nucleus	41.83	55.26
Bra015885.1-P	Field mustard	cytosol, golgi, peroxisome	38.65	52.43
Bra003782.1-P	Field mustard	cytosol	41.04	52.28
Bra014695.1-P	Field mustard	cytosol	26.29	51.97
Bra016526.1-P	Field mustard	cytosol	42.63	51.69
Bra000199.1-P	Field mustard	cytosol	33.07	51.55
Bra019524.1-P	Field mustard	cytosol	27.09	50.75
Bra025708.1-P	Field mustard	nucleus	41.43	48.83
Bra007242.1-P	Field mustard	cytosol, nucleus, plastid	30.68	45.56
Bra004615.1-P	Field mustard	nucleus	38.25	44.86
Bra000224.1-P	Field mustard	nucleus	37.05	43.06
Bra016943.1-P	Field mustard	cytosol	37.45	42.34
Bra007295.1-P	Field mustard	cytosol	37.45	39.83
Bra003265.1-P	Field mustard	cytosol	37.05	38.75
Bra014649.1-P	Field mustard	nucleus	35.46	38.03

Protein Annotations

MapMan:11.4.2.5	Gene3D:3.40.50.2300	EnsemblPlantsGene:Bra018439	EnsemblPlants:Bra018439.1	EnsemblPlants:Bra018439.1-P	InterPro:CheY-like_superfamily
GO:GO:0000160	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	InterPro:IPR001789	UniProt:M4DPJ8	PFAM:PF00072	PFscan:PS50110
PANTHER:PTHR43874	PANTHER:PTHR43874:SF17	SMART:SM00448	SUPFAM:SSF52172	InterPro:Sig_transdc_resp-reg_receiver	UniParc:UPI0002547F40
SEG:seg	:	:	:	:	:

Description

AT1G10470 (E=8e-086) ARR4, MEE7, ATRR1, IBC7 | ARR4 (RESPONSE REGULATOR 4); protein binding / transcription regulator/ two-component response regulator

Coordinates

chrA05:+:8229767..8230847

Molecular Weight (calculated)

27318.6 Da

IEP (calculated)

4.311

GRAVY (calculated)

-0.255

Length

251 amino acids

Sequence
(BLAST)

001: MAKDGGVSCL RSSEMLNVGI GGMEPPPLDL DEVHVLAVDD SLVDRIVIER LLRITSCKVT AVDSGWRALE FLGLDNDKAS DEFDKLKVDM IITDYCMPGM
101: TGYELLKKIK ESSSFRQVPV VIMSSENVLT RIDRCLEEGA EDFLLKPVKL ADVKRLRSCL TGDVKLSNGN KRKLPEDSVS VDTSLPPPPL SLTFSTNSSD
201: SSPPLSPVEV FSSPLSSPED DDDVLTSSPE GSPMSEESPI RRQKMGSPGL D

Best Arabidopsis Sequence Match ( AT1G10470.1 )
(BLAST)

001: MARDGGVSCL RRSEMMSVGG IGGIESAPLD LDEVHVLAVD DSLVDRIVIE RLLRITSCKV TAVDSGWRAL EFLGLDNEKA SAEFDRLKVD LIITDYCMPG
101: MTGYELLKKI KESSNFREVP VVIMSSENVL TRIDRCLEEG AQDFLLKPVK LADVKRLRSH LTKDVKLSNG NKRKLPEDSS SVNSSLPPPS PPLTISPESS
201: PPLTVSTESS DSSPPLSPVE IFSTSPLSSP IDDEDDDVLT SSSEESPIRR QKMRSPGLD

Arabidopsis Description

ARR4Two-component response regulator ARR4 [Source:UniProtKB/Swiss-Prot;Acc:O82798]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.