Factsheet for PGSC0003DMT400076860

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g041890.2.1	Tomato	nucleus	98.68	90.47
PGSC0003DMT400038784	Potato	cytosol	83.74	83.74
KXG32187	Sorghum	cytosol	81.66	81.82
TraesCS3A01G172000.1	Wheat	golgi, nucleus	80.72	81.49
TraesCS3D01G178500.1	Wheat	cytosol	80.72	81.49
Zm00001d040274_P001	Maize	cytosol	81.1	81.1
Os01t0253300-01	Rice	cytosol	80.34	80.8
Zm00001d008345_P003	Maize	cytosol	80.72	80.57
HORVU3Hr1G034750.5	Barley	cytosol	80.53	79.92
PGSC0003DMT400018802	Potato	cytosol	79.58	79.89
TraesCS3B01G202800.2	Wheat	cytosol	78.83	77.65
PGSC0003DMT400007130	Potato	cytosol	75.61	74.91
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.62	39.33
PGSC0003DMT400027134	Potato	cytosol	29.3	29.81

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:102605051	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006606
GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha
UniProt:M1CXI3	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	EnsemblPlantsGene:PGSC0003DMG400029895	PGSC:PGSC0003DMG400029895
EnsemblPlants:PGSC0003DMT400076860	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0002969F98	RefSeq:XP_006345634.1	:	:

Description

Importin alpha [Source:PGSC_GENE;Acc:PGSC0003DMG400029895]

Coordinates

chr8:+:20459521..20466178

Molecular Weight (calculated)

58404.9 Da

IEP (calculated)

4.904

GRAVY (calculated)

-0.256

Length

529 amino acids

Sequence
(BLAST)

001: MSLRPNARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKNK REENLQKKRR EGLQANQQFA VPVQATVEKK LENLPAMVAG VWTEDGNLQL EATTQFRKLL
101: SIERSPPIEE VIQAGVVPRF VQFLMRDDFP QLQFEAAWAL TNIASGTSEH TKVVIESGAV PIFVKLLSSP SDDVREQAVW ALGNVAGDSP KCRDLVLNCG
201: ALLPLLSQLN PNAKLSMLRN ATWTLSNFCR GKPQPAFDQT KPALPALQQL IHSTDEEVLT DACWALSYLS DGTNDKIQAV IDSGVCPRLV ELLLHPSPSV
301: LIPALRTVGN IVTGDDMQTQ CIIGHQALPC LLNLLNGSHK KSIKKEACWT ISNITAGNRE QIQCVVDAGI IGPLVNLLQN AEFEIKKEAA WAISNATSGG
401: SHEQIKYLVS QGCIKPLCDL LICPDPRIVT VCLEGLENIL KVGEAEKNLG RTSDINLYAQ LIDDAEGLEK IENLQSHDNQ EIYEKAVKIL ETYWLEEDDE
501: TMPPGDAPQQ GFQFGGGEVS VPSGGFSFN

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.