Factsheet for PGSC0003DMT400038784

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g060470.2.1	Tomato	extracellular	99.81	99.62
VIT_05s0077g01430.t01	Wine grape	cytosol	89.41	89.41
KRH02317	Soybean	cytosol	89.22	89.06
KRH11998	Soybean	endoplasmic reticulum	89.22	88.89
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	88.85	88.51
KRH50772	Soybean	cytosol, endoplasmic reticulum	75.43	88.08
PGSC0003DMT400076860	Potato	cytosol	83.74	83.74
AT4G16143.2	Thale cress	cytosol	84.5	83.55
CDY32215	Canola	cytosol	83.55	83.4
CDY34430	Canola	cytosol	83.55	83.4
Bra033534.1-P	Field mustard	cytosol	83.55	83.4
CDY09716	Canola	cytosol	83.93	82.99
CDY52043	Canola	cytosol	83.55	82.77
CDY22779	Canola	cytosol	83.36	82.58
Bra038043.1-P	Field mustard	cytosol	83.18	82.4
Bra012741.1-P	Field mustard	cytosol	55.58	82.35
CDX90544	Canola	cytosol	83.74	82.04
AT3G06720.2	Thale cress	cytosol	81.85	81.39
PGSC0003DMT400018802	Potato	cytosol	80.15	80.46
Bra012740.1-P	Field mustard	cytosol	23.63	79.11
PGSC0003DMT400007130	Potato	cytosol	76.18	75.47
Zm00001d042015_P001	Maize	cytosol	21.55	68.67
AT5G49310.1	Thale cress	cytosol	63.89	65.13
Zm00001d040153_P004	Maize	cytosol	20.23	58.47
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.77	51.93
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.62	39.33
Zm00001d024033_P002	Maize	plastid	15.31	37.33
PGSC0003DMT400027134	Potato	cytosol	28.36	28.85

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:102578456	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608
InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf
InterPro:Importing_su_alpha	UniProt:M1B7C9	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	EnsemblPlantsGene:PGSC0003DMG400014989
PGSC:PGSC0003DMG400014989	EnsemblPlants:PGSC0003DMT400038784	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316
PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI000296F8F0	RefSeq:XP_006355403.1	RefSeq:XP_006355404.1
RefSeq:XP_015167827.1	RefSeq:XP_015167828.1	SEG:seg	:	:	:

Description

Importin alpha 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400014989]

Coordinates

chr1:-:44190310..44195723

Molecular Weight (calculated)

58653.9 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.277

Length

529 amino acids

Sequence
(BLAST)

001: MSLRPSDRTE VRRNRYKVAV DADEGRRRRE DNLVEIRKSK REESLLKKRR EGLQAQQQQF PANLQTSTVE KKLESLPSMV AGVWSNDNNM QLEATTQFRK
101: LLSIERSPPI EEVIQSGVVP RFVEFLMRED FPQLQFEAAW ALTNIASGTS ENTRVVIDHG AVPIFVKLLA SPSDDVREQA VWALGNVAGD SPRCRDLVLS
201: NGALIPLLSQ LNEHAKLSML RNATWTLSNF CRGKPQPPFE QVRPALSALQ RLVHSNDEEV LTDACWALSY LSDGTNDKIQ AVIEAGVCPR LVELLMHPSP
301: SVLIPALRTV GNIVTGDDLQ TQCIIEHGAL ACLLSLLSHS HKKSIKKEAC WTISNITAGN KEQIQAVVEA GLISPLVNLL QTAEFDIKKE AAWAISNATS
401: GGSHEQIKFL VSQNCIKPLC DLLVCPDPRI VTVCLEGLEN ILKVGEAEKA NTEGINYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDE
501: TVPAGDGAQN EFNFGGNDIQ LPSGGFKFG

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.