Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_05s0077g01430.t01 | Wine grape | cytosol | 85.71 | 86.2 |
| KRH50772 | Soybean | cytosol, endoplasmic reticulum | 72.37 | 84.99 |
| AT4G16143.2 | Thale cress | cytosol | 85.34 | 84.86 |
| KRH02317 | Soybean | cytosol | 84.21 | 84.53 |
| KRH11998 | Soybean | endoplasmic reticulum | 83.65 | 83.8 |
| KRH37030 | Soybean | endoplasmic reticulum, mitochondrion | 83.27 | 83.43 |
| PGSC0003DMT400038784 | Potato | cytosol | 81.39 | 81.85 |
| Solyc01g060470.2.1 | Tomato | extracellular | 81.39 | 81.7 |
| AT1G09270.1 | Thale cress | cytosol | 73.5 | 72.68 |
| AT4G02150.1 | Thale cress | cytosol | 70.3 | 70.43 |
| AT1G02690.2 | Thale cress | cytosol | 70.3 | 69.39 |
| AT5G49310.1 | Thale cress | cytosol | 66.35 | 68.02 |
| Zm00001d042015_P001 | Maize | cytosol | 20.49 | 65.66 |
| AT3G05720.1 | Thale cress | cytosol | 58.46 | 58.9 |
| AT5G52000.1 | Thale cress | cytosol | 48.12 | 58.05 |
| AT1G32880.1 | Thale cress | cytosol | 19.74 | 57.38 |
| Zm00001d040153_P004 | Maize | cytosol | 18.61 | 54.1 |
| AT5G49305.2 | Thale cress | cytosol | 38.53 | 53.39 |
| Zm00001d024033_P002 | Maize | plastid | 13.91 | 34.1 |
| AT5G03070.1 | Thale cress | cytosol, plastid | 27.63 | 28.32 |
Protein Annotations
| Gene3D:1.20.5.690 | Gene3D:1.25.10.10 | MapMan:23.5.1.3 | EntrezGene:819857 | UniProt:A0A178VHS3 | ProteinID:AAF63826.1 |
| ProteinID:AAG50999.1 | ProteinID:AEE74447.1 | ProteinID:AEE74448.1 | EMBL:AF077528 | InterPro:ARM-like | InterPro:ARM-type_fold |
| Symbol:AT-IMP | ArrayExpress:AT3G06720 | EnsemblPlantsGene:AT3G06720 | RefSeq:AT3G06720 | TAIR:AT3G06720 | RefSeq:AT3G06720-TAIR-G |
| EnsemblPlants:AT3G06720.2 | TAIR:AT3G06720.2 | EMBL:AY054164 | EMBL:AY088732 | EMBL:AY094390 | EMBL:AY125529 |
| InterPro:Arm_3 | InterPro:Armadillo | Unigene:At.24233 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005618 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005635 | GO:GO:0005643 | GO:GO:0005654 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006606 | GO:GO:0006607 | GO:GO:0006810 | GO:GO:0008139 | GO:GO:0008150 | GO:GO:0008565 |
| GO:GO:0015031 | GO:GO:0030312 | GO:GO:0061608 | InterPro:IPR000225 | InterPro:IPR002652 | InterPro:IPR011989 |
| InterPro:IPR036975 | InterPro:Importin-a_IBB | InterPro:Importin-a_IBB_sf | InterPro:Importing_su_alpha | EMBL:L81172 | RefSeq:NP_187328.1 |
| RefSeq:NP_850524.1 | ProteinID:OAP04583.1 | PFAM:PF00514 | PFAM:PF01749 | PFAM:PF16186 | PIRSF:PIRSF005673 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50176 | PFscan:PS51214 | PANTHER:PTHR23316 | PANTHER:PTHR23316:SF22 | UniProt:Q96321 |
| SMART:SM00185 | SUPFAM:SSF48371 | EMBL:U69533 | UniParc:UPI000012D5F2 | EMBL:Y15224 | SEG:seg |
Description
IMPA1Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A178VHS3]
Coordinates
chr3:+:2120344..2124166
Molecular Weight (calculated)
58647.8 Da
IEP (calculated)
4.919
GRAVY (calculated)
-0.292
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLMKKRR EGMQALQGFP SASAASVDKK LDSLKDMVAG VWSDDPALQL ESTTQFRKLL
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS
101: SIERSPPIEE VISAGVVPRF VEFLKKEDYP AIQFEAAWAL TNIASGTSDH TKVVIDHNAV PIFVQLLASP SDDVREQAVW ALGNVAGDSP RCRDLVLGCG
201: ALLPLLNQLN EHAKLSMLRN ATWTLSNFCR GKPQPHFDQV KPALPALERL IHSDDEEVLT DACWALSYLS DGTNDKIQTV IQAGVVPKLV ELLLHHSPSV
301: LIPALRTVGN IVTGDDIQTQ CVINSGALPC LANLLTQNHK KSIKKEACWT ISNITAGNKD QIQTVVEANL ISPLVSLLQN AEFDIKKEAA WAISNATSGG
401: SHDQIKYLVE QGCIKPLCDL LVCPDPRIIT VCLEGLENIL KVGEAEKNLG HTGDMNYYAQ LIDDAEGLEK IENLQSHDNN EIYEKAVKIL ETYWLEEEDD
501: ETQQPPGVDG SQAGFQFGGN QAPVPSGGFN FS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.