CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02317	Soybean	cytosol	96.69	82.64
Bra012741.1-P	Field mustard	cytosol	64.68	82.07
KRH11998	Soybean	endoplasmic reticulum	94.7	80.79
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	93.6	79.85
VIT_05s0077g01430.t01	Wine grape	cytosol	91.39	78.26
KRH33847	Soybean	nucleus	89.4	76.13
KRG92948	Soybean	nucleus	89.4	76.13
Solyc01g060470.2.1	Tomato	extracellular	88.3	75.47
PGSC0003DMT400038784	Potato	cytosol	88.08	75.43
KRH68461	Soybean	nucleus	85.21	72.56
AT3G06720.2	Thale cress	cytosol	84.99	72.37
KRG96743	Soybean	nucleus	84.99	72.37
AT4G16143.2	Thale cress	cytosol	85.21	72.15
CDY34430	Canola	cytosol	84.33	72.08
CDY32215	Canola	cytosol	84.11	71.89
Bra033534.1-P	Field mustard	cytosol	84.11	71.89
CDY09716	Canola	cytosol	84.55	71.59
CDY52043	Canola	cytosol	83.66	70.97
CDY22779	Canola	cytosol	83.44	70.79
CDX90544	Canola	cytosol	84.33	70.74
Bra038043.1-P	Field mustard	cytosol	83.22	70.6
Zm00001d042015_P001	Maize	cytosol	24.94	68.07
AT5G49310.1	Thale cress	cytosol	65.56	57.23
KRG99893	Soybean	cytosol	50.99	52.74
KRG99898	Soybean	cytosol	50.55	51.93
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.87	49.72
KRG96699	Soybean	cytosol	51.43	48.14
KRG99895	Soybean	cytosol, plastid	50.77	47.03
KRG99853	Soybean	cytosol, plastid	50.77	47.03
KRH68429	Soybean	cytosol, plastid	51.88	45.02
KRG99088	Soybean	cytosol	41.72	42.47
Bra012740.1-P	Field mustard	cytosol	14.35	41.14
Zm00001d040153_P004	Maize	cytosol	16.34	40.44
KRG96700	Soybean	cytosol	43.93	39.25
Zm00001d024033_P002	Maize	plastid	13.69	28.57
KRH19830	Soybean	cytosol, plastid	28.04	24.56
KRH32422	Soybean	plastid	8.17	18.41

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100813320	MapMan:23.5.1.3	EMBL:ACUP02004715	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_07G242900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635
GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607
GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608
InterPro:IPR000225	InterPro:IPR011989	InterPro:Importing_su_alpha	UniProt:K7L3L7	EnsemblPlants:KRH50772	ProteinID:KRH50772
ProteinID:KRH50772.1	PFAM:PF00514	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PANTHER:PTHR23316
PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00029542CB	:	:

Description

hypothetical protein

Coordinates

chr7:+:42268571..42273017

Molecular Weight (calculated)

49545.2 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.070

Length

453 amino acids

Sequence
(BLAST)

001: MVAGVWSNDN SLQLEATTQF RKLLSIERSP PIEEVIQAGV VPRFVEFLVR EDFPQLQFEA AWALTNIASG TSENTKVVID HGAVPIFVKL LSSPSDDVRE
101: QAVWALGNVA GDSPRCRDLV LSHGALVPLL AQLNEHAKLS MLRNATWTLS NFCRGKPQPP FEQVRPALPA LERLVFSNDE EVLTDACWAL SYLSDGTNDK
201: IQAVIEAGVC PRLMQLLMHP SPSVLIPALR TVGNIVTGDD MQTQCIINHG ALPCLLNLLT NNHKKSIKKE ACWTISNITA GNKEQIQTVI EAGLVAPLVN
301: LLQSAEFDIK KEASWAISNA TSGGTHDQIK YLVSQGCVKP LCDLLVCPDP RIVTVCLEGL ENILKVGEAE KSLGNTGDVN VYAQMIDEAE GLEKIENLQS
401: HDNNEIYEKV VKILETYWLE EEDETLPSGN GAQPGFNFGN NELPVPSGGF NFS

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.