Factsheet for Bra012740.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040153_P004	Maize	cytosol	57.59	49.73
CDX90544	Canola	cytosol	100.0	29.26
CDY09716	Canola	cytosol	94.94	28.04
Bra033534.1-P	Field mustard	cytosol	89.24	26.6
Bra038043.1-P	Field mustard	cytosol	89.87	26.59
AT4G16143.2	Thale cress	cytosol	85.44	25.23
Zm00001d024033_P002	Maize	plastid	34.18	24.88
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	81.65	24.29
KRH11998	Soybean	endoplasmic reticulum	81.01	24.11
VIT_05s0077g01430.t01	Wine grape	cytosol	80.38	24.01
KRH02317	Soybean	cytosol	80.38	23.96
PGSC0003DMT400038784	Potato	cytosol	79.11	23.63
Solyc01g060470.2.1	Tomato	extracellular	79.11	23.58
Zm00001d042015_P001	Maize	cytosol	24.05	22.89
Bra018570.1-P	Field mustard	cytosol	68.99	20.11
Bra008559.1-P	Field mustard	cytosol	64.56	19.21
Bra000891.1-P	Field mustard	cytosol	61.39	18.73
Bra033342.1-P	Field mustard	cytosol	61.39	18.62
Bra020649.1-P	Field mustard	cytosol	55.7	16.54
Bra039416.1-P	Field mustard	cytosol	51.27	16.23
Bra030765.1-P	Field mustard	cytosol	68.99	14.46
KRH50772	Soybean	cytosol, endoplasmic reticulum	41.14	14.35
Bra030771.1-P	Field mustard	cytosol	34.18	12.41
Bra028852.1-P	Field mustard	cytosol	28.48	8.54
Bra012741.1-P	Field mustard	cytosol	3.16	1.4
Bra009550.1-P	Field mustard	plastid	2.53	1.37

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo
EnsemblPlantsGene:Bra012740	EnsemblPlants:Bra012740.1	EnsemblPlants:Bra012740.1-P	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	UniProt:M4D8D0
PFAM:PF00514	PFAM:PF01749	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00025408A1	SEG:seg	:	:

Description

AT4G16143 (E=7e-069) IMPA-2 | IMPA-2 (IMPORTIN ALPHA ISOFORM 2); binding / protein transporter

Coordinates

chrA03:-:22499643..22500435

Molecular Weight (calculated)

17929.3 Da

IEP (calculated)

10.000

GRAVY (calculated)

-0.666

Length

158 amino acids

Sequence
(BLAST)

001: MSLRPNARTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKTK REESLLKKRR EGLQPTQLPQ FDPSSLASAA AAGASSSVEK RLESLPSMVG GVWSEDRSLQ
101: LEATTQFRKL LSIERSPPIE EVIEAGVVPR FVEFLKREDY PQLQFEAAWA LTNIASGT

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.