Factsheet for Bra012741.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09716	Canola	cytosol	98.04	65.42
CDX90544	Canola	cytosol	98.6	65.19
KRH50772	Soybean	cytosol, endoplasmic reticulum	82.07	64.68
AT4G16143.2	Thale cress	cytosol	95.8	63.93
Bra038043.1-P	Field mustard	cytosol	94.12	62.92
Bra033534.1-P	Field mustard	cytosol	93.28	62.83
VIT_05s0077g01430.t01	Wine grape	cytosol	85.99	58.03
KRH11998	Soybean	endoplasmic reticulum	84.03	56.5
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	83.47	56.12
KRH02317	Soybean	cytosol	83.19	56.04
PGSC0003DMT400038784	Potato	cytosol	82.35	55.58
Solyc01g060470.2.1	Tomato	extracellular	82.35	55.47
Bra018570.1-P	Field mustard	cytosol	73.67	48.52
Bra008559.1-P	Field mustard	cytosol	70.59	47.46
Bra033342.1-P	Field mustard	cytosol	66.95	45.87
Bra000891.1-P	Field mustard	cytosol	65.27	44.98
Bra020649.1-P	Field mustard	cytosol	66.67	44.74
Bra039416.1-P	Field mustard	cytosol	53.22	38.08
Bra030765.1-P	Field mustard	cytosol	73.67	34.88
Zm00001d042015_P001	Maize	cytosol	15.97	34.34
Bra030771.1-P	Field mustard	cytosol	33.33	27.36
Bra009550.1-P	Field mustard	plastid	19.61	23.97
Bra028852.1-P	Field mustard	cytosol	26.05	17.65
Zm00001d040153_P004	Maize	cytosol	3.36	6.56
Zm00001d024033_P002	Maize	plastid	2.52	4.15
Bra012740.1-P	Field mustard	cytosol	1.4	3.16

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo
EnsemblPlantsGene:Bra012741	EnsemblPlants:Bra012741.1	EnsemblPlants:Bra012741.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000225	InterPro:IPR011989	UniProt:M4D8D1	PFAM:PF00514	PFAM:PF16186	PFscan:PS50176
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI00025408A0	SEG:seg

Description

AT4G16143 (E=7e-186) IMPA-2 | IMPA-2 (IMPORTIN ALPHA ISOFORM 2); binding / protein transporter

Coordinates

chrA03:-:22494019..22495753

Molecular Weight (calculated)

38810.3 Da

IEP (calculated)

4.469

GRAVY (calculated)

-0.069

Length

357 amino acids

Sequence
(BLAST)

001: MFMFQAVWAL GNVAGDSPRC RDLVLGQGAL LPLLSQLNEH AKLSMLRNAT WTLSNFCRGK PQPPFDQVRP ALPALERLIH STDEEVLTDA CWALSYLSDG
101: TNDKIQSVIE AGVVPRLVEL LLHPSPSVLI PALRSIGNIV TGDDTQTQCV ISHGALLSLL SLLTHNHKKS IKKEACWTIS NITAGNRDQI QAVCEAGVIC
201: PLVNLLQNAE FDIKKEAAWA VSNATSGGSP DQIKYMVEQG VVKPLCDLLI CPDPRIITVC LEGLENILKV GEAEKVTGNT GDVNFYAQLI DDAEGLEKIE
301: NLQSHDNSEI YEKAVKILET YWLEEEDETL PHGDGSAQGF QFGGNDAAAP PGGFNFQ

Best Arabidopsis Sequence Match ( AT1G02690.1 )
(BLAST)

001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQTKAALPA LERLLHSTDE EVLTDASWAL SYLSDGTNEK IQTVIDAGVI PRLVQLLAHP
301: SPSVLIPALR TIGNIVTGDD IQTQAVISSQ ALPGLLNLLK NTYKKSIKKE ACWTISNITA GNTSQIQEVF QAGIIRPLIN LLEIGEFEIK KEAVWAISNA
401: TSGGNHDQIK FLVSQGCIRP LCDLLPCPDP RVVTVTLEGL ENILKVGEAE KNLGNTGNDN LYAQMIEDAD GLDKIENLQS HDNNEIYEKA VKILESYWAA
501: DDEEEDIGGV DAPENVQSSG FQFGNQSGNA PTGGFNFG

Arabidopsis Description

IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.