CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11998	Soybean	endoplasmic reticulum	98.68	98.68
KRH02317	Soybean	cytosol	93.97	94.15
KRH50772	Soybean	cytosol, endoplasmic reticulum	79.85	93.6
VIT_05s0077g01430.t01	Wine grape	cytosol	91.9	92.25
PGSC0003DMT400038784	Potato	cytosol	88.51	88.85
Solyc01g060470.2.1	Tomato	extracellular	88.32	88.49
KRH33847	Soybean	nucleus	87.95	87.78
KRG92948	Soybean	nucleus	87.95	87.78
AT4G16143.2	Thale cress	cytosol	86.44	85.79
KRH68461	Soybean	nucleus	85.12	84.96
CDY34430	Canola	cytosol	84.56	84.72
CDY32215	Canola	cytosol	84.37	84.53
Bra033534.1-P	Field mustard	cytosol	84.37	84.53
KRG96743	Soybean	nucleus	84.56	84.4
CDY09716	Canola	cytosol	84.93	84.3
CDY22779	Canola	cytosol	84.18	83.71
Bra038043.1-P	Field mustard	cytosol	84.18	83.71
CDX90544	Canola	cytosol	84.93	83.52
Bra012741.1-P	Field mustard	cytosol	56.12	83.47
CDY52043	Canola	cytosol	83.8	83.33
AT3G06720.2	Thale cress	cytosol	83.43	83.27
Bra012740.1-P	Field mustard	cytosol	24.29	81.65
Zm00001d042015_P001	Maize	cytosol	21.09	67.47
AT5G49310.1	Thale cress	cytosol	64.03	65.51
Zm00001d040153_P004	Maize	cytosol	20.15	58.47
KRG96699	Soybean	cytosol	49.91	54.75
KRG99893	Soybean	cytosol	44.26	53.65
KRG99898	Soybean	cytosol	43.88	52.83
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.51	51.38
KRG99895	Soybean	cytosol, plastid	47.27	51.33
KRG99853	Soybean	cytosol, plastid	47.27	51.33
KRH68429	Soybean	cytosol, plastid	50.09	50.96
KRG99088	Soybean	cytosol	39.36	46.97
KRG96700	Soybean	cytosol	41.05	43.0
Zm00001d024033_P002	Maize	plastid	14.88	36.41
KRH19830	Soybean	cytosol, plastid	29.0	29.79
KRH32422	Soybean	plastid	10.92	28.86

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100780020	MapMan:23.5.1.3	EMBL:ACUP02005408	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_09G039600	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606
GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	UniProt:I1L0U6	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EnsemblPlants:KRH37030	ProteinID:KRH37030	ProteinID:KRH37030.1
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0001D65096	:

Description

hypothetical protein

Coordinates

chr9:+:3311018..3315238

Molecular Weight (calculated)

58594.9 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.253

Length

531 amino acids

Sequence
(BLAST)

001: MSLRPNARTE VRRNRYKVAV DADEGRRRRE DNMVEIRKSK REESLQKKRR EGLQAQQQFP TPLQAASIVE KKLESLPAMV AGVWSDDNSQ QLEATTQFRK
101: LLSIERSPPI EEVIQAGVVP RFVEFLVRED FPQLQFEAAW ALTNIASGTS ENTKVVIDHG AVPIFVKLLS SPSDDVREQA VWALGNVAGD SPKCRDLVLS
201: HGALIPLLAQ LNEHAKLSML RNATWTLSNF CRGKPQPPFE QVRAALPALE RLVFSNDEEV LTDACWALSY LSDGTNDKIQ AVIEAGVCPR LVQLLLHPSP
301: SVLIPALRTV GNIVTGDDMQ TQTIINHGAL PCLLSLLTHN HKKSIKKEAC WTISNITAGN RDQIQAVVEA GLIAPLVNLL QNAEFDIKKE AAWAISNATS
401: GGTHEQIKYL VSQGCIKPLC DLLVCPDPRI VTVCLEGLEN ILKVGEAEKS MGNSGDVNLY AQMIDEAEGL EKIENLQSHD NNEIYEKAVK ILETYWLEDD
501: DETLPTGDGA QPGFNFGNND VPVPSGGFNF S

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.