CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99893	Soybean	cytosol	48.09	48.86
KRG99895	Soybean	cytosol, plastid	53.48	48.67
KRG99853	Soybean	cytosol, plastid	53.48	48.67
KRG99898	Soybean	cytosol	48.09	48.53
Solyc01g100720.2.1	Tomato	nucleus	51.24	42.7
PGSC0003DMT400007130	Potato	cytosol	50.79	42.32
KRG96699	Soybean	cytosol	45.84	42.15
VIT_14s0060g00930.t01	Wine grape	cytosol	50.56	42.06
KRH68429	Soybean	cytosol, plastid	48.99	41.76
KRH50772	Soybean	cytosol, endoplasmic reticulum	42.47	41.72
CDX94988	Canola	cytosol	48.09	39.63
Bra018570.1-P	Field mustard	cytosol	48.09	39.48
CDX93514	Canola	cytosol	48.09	39.48
KRG92948	Soybean	nucleus	47.19	39.47
KRH33847	Soybean	nucleus	47.19	39.47
AT1G09270.1	Thale cress	cytosol	47.64	39.41
KRH11998	Soybean	endoplasmic reticulum	46.97	39.36
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	46.97	39.36
KRG96743	Soybean	nucleus	46.97	39.29
CDY31102	Canola	plasma membrane	47.64	39.11
KRH02317	Soybean	cytosol	46.29	38.87
CDY32165	Canola	cytosol	47.19	38.75
KRH68461	Soybean	nucleus	46.29	38.72
KRG96700	Soybean	cytosol	42.25	37.08
GSMUA_Achr5P27180_001	Banana	cytosol	34.16	32.83
HORVU2Hr1G016300.1	Barley	cytosol	33.03	32.24
Os07t0688300-01	Rice	cytosol	32.81	31.6
KXG36990	Sorghum	cytosol	35.96	28.42
TraesCS2B01G112400.2	Wheat	cytosol	35.51	28.01
TraesCS2D01G096200.1	Wheat	cytosol	35.51	28.01
Bra030765.1-P	Field mustard	cytosol	47.42	27.98
TraesCS2A01G097100.1	Wheat	cytosol	35.28	27.89
Zm00001d022536_P008	Maize	cytosol	35.28	27.64
KRH32422	Soybean	plastid	9.21	20.4
KRH19830	Soybean	cytosol, plastid	23.37	20.12

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100775604	MapMan:23.5.1.3	EMBL:ACUP02010960	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlantsGene:GLYMA_18G119800	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643
GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810
GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225
InterPro:IPR011989	InterPro:Importing_su_alpha	UniProt:K7MRI2	EnsemblPlants:KRG99088	ProteinID:KRG99088	ProteinID:KRG99088.1
PFAM:PF00514	PIRSF:PIRSF005673	PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF17	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI00023DA660	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:14895766..14899153

Molecular Weight (calculated)

49375.7 Da

IEP (calculated)

4.812

GRAVY (calculated)

-0.039

Length

445 amino acids

Sequence
(BLAST)

001: MSLQPGSGSG SGSDSGSGSE KRKKSYDSEI NLVDDTPLKK GRREELSSEI PSKEKLLEAI PEMKQRIWSE CPDEQMDAMM HFTNLLGSIE PPRPIDEVIE
101: AEVVPRFVQF LDMYDKPDLQ FEAVWSLTNI ASGKSHHTRV VVEHGAVPLL VKLLILSNNE DVIEQVVWAI SNIAGESPKY RDLVLEEGVL LPLISLLGPP
201: LPTMSMLLTT TWTLSNLVRG KPHVQFKQVE PLMPVLKTLI DMDNEEVLLN ACSALYFLSN VSAGATQAII EAEVCPKLVE LLLYSSDSVS LLALQTLGNI
301: AAGNDAQTQH VIDNQFLPPV RLLLFLTRER NEIIFRKACW AISNITAGNR TQIQAVIDAE IFPILVGFFC HHHADSDFDI KKEVVWAITN ATRRGSADQI
401: MDLADQGCAK PLSELLTHPN PEIVSICVEG LQKILMARIS QQQRR

Best Arabidopsis Sequence Match ( AT1G09270.1 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.