CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93514	Canola	cytosol	99.81	99.45
CDY32165	Canola	cytosol	97.22	96.86
CDY31102	Canola	plasma membrane	97.22	96.86
AT1G09270.1	Thale cress	cytosol	92.96	93.31
VIT_14s0060g00930.t01	Wine grape	cytosol	82.96	83.74
PGSC0003DMT400007130	Potato	cytosol	82.78	83.71
Solyc01g100720.2.1	Tomato	nucleus	82.41	83.33
CDY52043	Canola	cytosol	74.07	74.91
CDY22779	Canola	cytosol	73.89	74.72
CDY09716	Canola	cytosol	73.89	74.58
CDX90544	Canola	cytosol	73.89	73.89
CDY34430	Canola	cytosol	72.41	73.77
CDY32215	Canola	cytosol	72.41	73.77
GSMUA_Achr8P22290_001	Banana	cytosol	72.78	71.32
CDY01921	Canola	cytosol	63.89	64.97
CDX97257	Canola	cytosol	63.7	64.78
CDY64806	Canola	cytosol	60.0	62.55
CDX89948	Canola	cytosol	60.19	62.38
CDX90948	Canola	cytosol	59.44	61.97
CDY33917	Canola	cytosol	58.52	59.4
CDY05638	Canola	cytosol	58.15	58.91
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.44	58.01
KRG96699	Soybean	cytosol	50.93	56.82
KRG99893	Soybean	cytosol	44.07	54.34
KRH68429	Soybean	cytosol, plastid	52.41	54.21
CDY05194	Canola	cytosol	53.33	53.63
KRG99898	Soybean	cytosol	43.7	53.51
CDY27746	Canola	cytosol	53.52	53.32
KRG99895	Soybean	cytosol, plastid	47.96	52.97
KRG99853	Soybean	cytosol, plastid	47.96	52.97
Os07t0688300-01	Rice	cytosol	42.22	49.35
HORVU2Hr1G016300.1	Barley	cytosol	41.67	49.34
KRG99088	Soybean	cytosol	39.63	48.09
KRG96700	Soybean	cytosol	43.89	46.75
TraesCS2D01G096200.1	Wheat	cytosol	46.85	44.86
TraesCS2A01G097100.1	Wheat	cytosol	46.48	44.58
KXG36990	Sorghum	cytosol	46.48	44.58
TraesCS2B01G112400.2	Wheat	cytosol	46.48	44.5
Zm00001d022536_P008	Maize	cytosol	45.0	42.78
CDY15260	Canola	cytosol	60.0	41.81
CDX70330	Canola	cytosol, extracellular	14.26	29.5
CDY04878	Canola	plastid	28.33	29.37
CDY55698	Canola	cytosol, plastid	28.15	29.23
CDY10407	Canola	cytosol	25.93	28.34

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078E6I8	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Arm_3	InterPro:Armadillo	EnsemblPlants:CDX94988	ProteinID:CDX94988	ProteinID:CDX94988.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00100487001	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989
InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	PFAM:PF00514	PFAM:PF01749
PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF22
SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0004EBE479	SEG:seg	:	:

Description

BnaC05g06830D

Coordinates

chrLK031886:-:557494..560591

Molecular Weight (calculated)

59586.3 Da

IEP (calculated)

4.976

GRAVY (calculated)

-0.255

Length

540 amino acids

Sequence
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQQQ PLGAGLDALQ SAAAVEKRLE GIPMMVQGVY SEDPQAQLEA
101: TTQFRKLLSI ERSPPIDEVI KAGVIPRFVE FLRRQDHPQL QFEAAWALTN VASGTSDHTR VVIEHGAVPI FVELLSSASD DVREQAVWAL GNVAGDSPNC
201: RNLVLSCGAL APLLSQLNEN SKLSMLRNAT WTLSNFCRGK PPTPFEEVKP ALPVLRQLIY LNDEEVLTDA CWALSYLSDG PNDKIQAVIQ AGVCPRLVEL
301: LSHPSPTVLI PALRTVGNIV TGDDSQTQFI IDSGVLPHLY NLLTQNHKKS IKKEACWTIS NITAGNKVQI EAVVGAGIVL PLVHLLQNAE FDIKKEAAWA
401: ISNATSGGSH EQIQYLVAQG CIKPLCDLLI CPDPRIVTVC LEGLENILKI GEADKEMGLN GGVNLYAQII EESDGLDKIE NLQSHDNNEI YEKAVKILER
501: YWAEEEDEQI LPDGVNENPQ QGFSFGNNQT AAPPGGFKFG

Best Arabidopsis Sequence Match ( AT1G09270.2 )
(BLAST)

001: MSLRPSTRAE LRKKIYKTGV DADEARRRRE DNLVEIRKNK REDSLLKKRR EGMMLQQQLP LGAGLDGPQT AAAVEKRLEG IPMMVQGVYS DDPQAQLEAT
101: TQFRKLLSIE RSPPIDEVIK AGVIPRFVEF LGRHDHPQLQ FEAAWALTNV ASGTSDHTRV VIEQGAVPIF VKLLTSASDD VREQAVWALG NVAGDSPNCR
201: NLVLNYGALE PLLAQLNENS KLSMLRNATW TLSNFCRGKP PTPFEQVKPA LPILRQLIYL NDEEVLTDAC WALSYLSDGP NDKIQAVIEA GVCPRLVELL
301: GHQSPTVLIP ALRTVGNIVT GDDSQTQFII ESGVLPHLYN LLTQNHKKSI KKEACWTISN ITAGNKLQIE AVVGAGIILP LVHLLQNAEF DIKKEAAWAI
401: SNATSGGSHE QIQYLVTQGC IKPLCDLLIC PDPRIVTVCL EGLENILKVG EADKEMGLNS GVNLYAQIIE ESDGLDKVEN LQSHDNNEIY EKAVKILERY
501: WAEEEEEQIL QDGGNDNSQQ AFNFGNNPAA PVGGFKFA

Arabidopsis Description

IMPA4Importin subunit alpha-4 [Source:UniProtKB/Swiss-Prot;Acc:O80480]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.