CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04878	Canola	plastid	97.88	97.7
AT5G03070.1	Thale cress	cytosol, plastid	92.12	92.29
Bra028852.1-P	Field mustard	cytosol	93.46	92.22
CDX70330	Canola	cytosol, extracellular	45.0	89.66
CDY10407	Canola	cytosol	82.69	87.04
VIT_08s0040g02290.t01	Wine grape	cytosol	77.31	77.76
KRH19830	Soybean	cytosol, plastid	74.23	74.66
PGSC0003DMT400027134	Potato	cytosol	72.12	72.12
KRH32422	Soybean	plastid	27.69	71.64
Solyc10g084270.1.1	Tomato	cytosol	70.96	70.96
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	66.73	66.6
Zm00001d008640_P002	Maize	plastid	65.58	64.83
TraesCS3B01G152900.1	Wheat	plastid	63.65	63.17
HORVU3Hr1G025640.2	Barley	plastid	63.08	62.6
Os01t0158000-01	Rice	cytosol	62.31	61.36
EES02429	Sorghum	plastid	64.62	59.47
TraesCS3D01G135500.2	Wheat	plastid	63.46	58.72
TraesCS3A01G309900.2	Wheat	plastid	63.27	58.54
CDY32215	Canola	cytosol	29.81	29.25
CDY34430	Canola	cytosol	29.81	29.25
CDY09716	Canola	cytosol	30.0	29.16
CDY22779	Canola	cytosol	29.42	28.65
CDY52043	Canola	cytosol	29.42	28.65
CDX93514	Canola	cytosol	29.62	28.41
CDX89948	Canola	cytosol	28.46	28.41
CDX90544	Canola	cytosol	29.42	28.33
CDY31102	Canola	plasma membrane	29.42	28.23
CDX94988	Canola	cytosol	29.23	28.15
CDY32165	Canola	cytosol	29.04	27.86
CDX97257	Canola	cytosol	27.69	27.12
CDY64806	Canola	cytosol	26.92	27.03
CDX90948	Canola	cytosol	26.92	27.03
CDY01921	Canola	cytosol	27.5	26.93
CDY33917	Canola	cytosol	25.58	25.0
CDY05638	Canola	cytosol	25.58	24.95
CDY27746	Canola	cytosol	25.58	24.54
CDY05194	Canola	cytosol	25.0	24.21
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	6.92	19.89
CDY15260	Canola	cytosol	29.42	19.74

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	GO:A0A078IZ00	UniProt:A0A078IZ00	InterPro:ARM-like	InterPro:ARM-type_fold
InterPro:Armadillo	EnsemblPlants:CDY55698	ProteinID:CDY55698	ProteinID:CDY55698.1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	EnsemblPlantsGene:GSBRNA2T00017203001	InterPro:IPR000225	InterPro:IPR011989	InterPro:Importing_su_alpha	PFAM:PF00514
PIRSF:PIRSF005673	PANTHER:PTHR23316	PANTHER:PTHR23316:SF1	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0004EBC6F9
SEG:seg	:	:	:	:	:

Description

BnaC02g03390DImportin subunit alpha [Source:UniProtKB/TrEMBL;Acc:A0A078IZ00]

Coordinates

chrLK033421:-:42507..45495

Molecular Weight (calculated)

56469.4 Da

IEP (calculated)

5.228

GRAVY (calculated)

-0.052

Length

520 amino acids

Sequence
(BLAST)

001: MADDGSASNR RDPIKSSVGN VAGQRRRQQA VTVAKERRES LVRAKRLCRV GTNGGDDEDA RVENEMMIDE EQPVLEAQTV KAVEELKSAV QSQGKGAMQK
101: RVTALRELRR LLSKSEFPPI DAALTAGAIP LLVQCLSFGS PDEQLLESAW CLTNIAAGKP EETKALLPAL PLLIAHLGEK NSAPVAEQCA WAIGNVAGEG
201: EELRNVLLSQ GALPPLARMI FPDKGSTVRT AAWALSNLIK GPESKAAAQL VRVDGIVDAI LRHLKKTDEE IATEIAWIVV YLSALSDIAT SMLLKGGILQ
301: LLVERLATSD SLQLLIPVLR SLGNFVSVDP KAMLTILIGG QNTEENAINV LGKCLRSEHR VLKKEAAWVL SNIAAGSIEH KRVIHSSEAM PLLLRLLSTS
401: PFDIKKEVAY VLGNLCVESA EGDARPRIIQ EHLVSIVSGG CLRGFIDLVR SPDIEAARLG LQFIELVLRG MPNGEGPKLV EGEDGIDAME RFQFHENEEL
501: RVMANSLVDK YFGEDYGINE

Best Arabidopsis Sequence Match ( AT5G03070.1 )
(BLAST)

001: MADDGSASNR RDPIKSSVGN VAGQRRRKQA VTVAKERREL LVRAKRLCRV GTNGDVEDAL VENEMMVDEE QPILEAQASK SVEELKSAVQ YQGKGAMQKR
101: VTALRELRRL LSKSEFPPVE AALRAGAIPL LVQCLSFGSP DEQLLESAWC LTNIAAGKPE ETKALLPALP LLIAHLGEKS SAPVAEQCAW AIGNVAGEGE
201: DLRNVLLSQG ALPPLARMIF PDKGSTVRTA AWALSNLIKG PESKAAAQLV KIDGILDAIL RHLKKTDEET ATEIAWIIVY LSALSDIATS MLLKGGILQL
301: LIDRLATSSS LQLLIPVLRS LGNFVAVDPK AVLTILIREQ NTEESIIGVL AKCLRSEHRV LKKEAAWVLS NIAAGSIEHK RMIHSTEVMP LLLRILSTSP
401: FDIRKEVAYV LGNLCVESAE GDRKPRIIQE HLVSIVSGGC LRGFIELVRS PDIEAARLGL QFIELVLRGM PNGEGPKLVE GEDGIDAMER FQFHENEELR
501: VMANSLVDKY FGEDYGIDE

Arabidopsis Description

IMPA9Importin subunit alpha-9 [Source:UniProtKB/Swiss-Prot;Acc:F4KF65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.