Factsheet for Solyc10g084270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400027134	Potato	cytosol	97.88	97.88
VIT_08s0040g02290.t01	Wine grape	cytosol	76.54	76.98
KRH19830	Soybean	cytosol, plastid	73.46	73.89
CDY04878	Canola	plastid	71.15	71.02
CDY55698	Canola	cytosol, plastid	70.96	70.96
AT5G03070.1	Thale cress	cytosol, plastid	70.0	70.13
KRH32422	Soybean	plastid	26.92	69.65
Bra028852.1-P	Field mustard	cytosol	69.23	68.31
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum, nucleus, plastid	67.31	67.18
CDY10407	Canola	cytosol	61.54	64.78
CDX70330	Canola	cytosol, extracellular	32.31	64.37
Zm00001d008640_P002	Maize	plastid	62.69	61.98
Bra009550.1-P	Field mustard	plastid	34.42	61.3
HORVU3Hr1G025640.2	Barley	plastid	61.35	60.88
TraesCS3B01G152900.1	Wheat	plastid	61.35	60.88
Os01t0158000-01	Rice	cytosol	60.19	59.28
EES02429	Sorghum	plastid	63.08	58.05
TraesCS3D01G135500.2	Wheat	plastid	61.54	56.94
TraesCS3A01G309900.2	Wheat	plastid	61.35	56.76
Solyc01g100720.2.1	Tomato	nucleus	29.81	29.03
Solyc01g060470.2.1	Tomato	extracellular	29.42	28.87
Solyc06g009750.2.1	Tomato	nucleus	28.46	28.08
Solyc08g041890.2.1	Tomato	nucleus	30.19	27.21

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Armadillo	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829
GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565
GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR011989	InterPro:Importing_su_alpha	UniProt:K4D3L3
PFAM:PF00514	PIRSF:PIRSF005673	PFscan:PS50176	PANTHER:PTHR23316	PANTHER:PTHR23316:SF1	SMART:SM00185
SUPFAM:SSF48371	EnsemblPlantsGene:Solyc10g084270.1	EnsemblPlants:Solyc10g084270.1.1	UniParc:UPI000276A261	SEG:seg	:

Description

Importin subunit alpha-9 [Source:Projected from Arabidopsis thaliana (AT5G03070) UniProtKB/Swiss-Prot;Acc:F4KF65]

Coordinates

chr10:+:63887534..63895157

Molecular Weight (calculated)

56769.9 Da

IEP (calculated)

5.126

GRAVY (calculated)

0.046

Length

520 amino acids

Sequence
(BLAST)

001: MADEGLVSHK RDPIKASVGN AAAQRRRQHA VTVGKERREA LMRTKRLCRV GVSADFDEAS MDDSDMMIEE DQAILEALTS AAVEELKLDV AYQGKGATEK
101: RVNALRELRR FLSRSEFPPV EAALQAGVIP LLIQCLSFGS SDEQLLEAAW CLTNIAAGKP EETKALLPAL PLLVVHLGEK SSIHVMEQCA WALGNVAGES
201: EELRNVLLLQ GALPALARML LPNKRSTVRT AAWALSNLIK GPDPRAATEL IKIDGIPDRI VRHLKKGDDE LATEVAWVVV YLTALSNVAT TILAKSDLVQ
301: VLVEILDMST SLQLLIPVLR SLGNLVAGEP HITNFVLVAR HALTGDAIQA LVKCLKSEHR ILNKEAAWVL SNIAAGSVEH KQLIYSSEAM PLLLNLLSKA
401: AFDIKKEVAY VLGNICVAPT EGSGRPNVIL DHLVNLVRGG CLTGFLDLVR SADVEAARLG LQFIELVLRG MPNGEGPKLV EREDGIDAME RYQFHENEEL
501: RSMANELVDS YFGEEYGLDE

Best Arabidopsis Sequence Match ( AT5G03070.1 )
(BLAST)

001: MADDGSASNR RDPIKSSVGN VAGQRRRKQA VTVAKERREL LVRAKRLCRV GTNGDVEDAL VENEMMVDEE QPILEAQASK SVEELKSAVQ YQGKGAMQKR
101: VTALRELRRL LSKSEFPPVE AALRAGAIPL LVQCLSFGSP DEQLLESAWC LTNIAAGKPE ETKALLPALP LLIAHLGEKS SAPVAEQCAW AIGNVAGEGE
201: DLRNVLLSQG ALPPLARMIF PDKGSTVRTA AWALSNLIKG PESKAAAQLV KIDGILDAIL RHLKKTDEET ATEIAWIIVY LSALSDIATS MLLKGGILQL
301: LIDRLATSSS LQLLIPVLRS LGNFVAVDPK AVLTILIREQ NTEESIIGVL AKCLRSEHRV LKKEAAWVLS NIAAGSIEHK RMIHSTEVMP LLLRILSTSP
401: FDIRKEVAYV LGNLCVESAE GDRKPRIIQE HLVSIVSGGC LRGFIELVRS PDIEAARLGL QFIELVLRGM PNGEGPKLVE GEDGIDAMER FQFHENEELR
501: VMANSLVDKY FGEDYGIDE

Arabidopsis Description

IMPA9Importin subunit alpha-9 [Source:UniProtKB/Swiss-Prot;Acc:F4KF65]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.