Factsheet for Solyc01g060470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038784	Potato	cytosol	99.62	99.81
VIT_05s0077g01430.t01	Wine grape	cytosol	89.43	89.6
KRH02317	Soybean	cytosol	89.25	89.25
KRH11998	Soybean	endoplasmic reticulum	89.25	89.08
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	88.49	88.32
KRH50772	Soybean	cytosol, endoplasmic reticulum	75.47	88.3
AT4G16143.2	Thale cress	cytosol	84.53	83.74
Bra033534.1-P	Field mustard	cytosol	83.58	83.58
CDY34430	Canola	cytosol	83.58	83.58
CDY32215	Canola	cytosol	83.58	83.58
CDY09716	Canola	cytosol	83.96	83.18
CDY52043	Canola	cytosol	83.4	82.77
CDY22779	Canola	cytosol	83.21	82.58
Bra038043.1-P	Field mustard	cytosol	83.02	82.4
Bra012741.1-P	Field mustard	cytosol	55.47	82.35
CDX90544	Canola	cytosol	83.58	82.04
AT3G06720.2	Thale cress	cytosol	81.7	81.39
Solyc06g009750.2.1	Tomato	nucleus	80.0	80.46
Bra012740.1-P	Field mustard	cytosol	23.58	79.11
Solyc08g041890.2.1	Tomato	nucleus	83.77	76.95
Solyc01g100720.2.1	Tomato	nucleus	76.23	75.66
Zm00001d042015_P001	Maize	cytosol	21.51	68.67
AT5G49310.1	Thale cress	cytosol	63.96	65.32
Zm00001d040153_P004	Maize	cytosol	20.19	58.47
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.74	51.93
Zm00001d024033_P002	Maize	plastid	15.28	37.33
Solyc10g084270.1.1	Tomato	cytosol	28.87	29.42

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005643	GO:GO:0005654
GO:GO:0005737	GO:GO:0005829	GO:GO:0006606	GO:GO:0006607	GO:GO:0006810	GO:GO:0008139
GO:GO:0008150	GO:GO:0008565	GO:GO:0015031	GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652
InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	UniProt:K4AWF0
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc01g060470.2	EnsemblPlants:Solyc01g060470.2.1
UniParc:UPI000276252E	SEG:seg	:	:	:	:

Description

Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:K4AWF0]

Coordinates

chr1:+:70967213..70972533

Molecular Weight (calculated)

58739.0 Da

IEP (calculated)

4.880

GRAVY (calculated)

-0.273

Length

530 amino acids

Sequence
(BLAST)

001: MSLRPSDRTE VRRNRYKVAV DADEGRRRRE DNLVEIRKSK REESLLKKRR EGLQAAQQQQ FPANLQTSTV EKKLESLPSM VAGVWSNDNN MQLEATTQFR
101: KLLSIERSPP IEEVIQSGVV PRFVEFLMRE DFPQLQFEAA WALTNIASGT SENTRVVIDH GAVPIFVKLL ASPSDDVREQ AVWALGNVAG DSPRCRDLVL
201: SNGALIPLLS QLNEHAKLSM LRNATWTLSN FCRGKPQPPF EQVRPALSAL QRLVHSNDEE VLTDACWALS YLSDGTNDKI QAVIEAGVCP RLVELLMHPS
301: PSVLIPALRT VGNIVTGDDL QTQCIIEHGA LACLLSLLSH SHKKSIKKEA CWTISNITAG NKEQIQAVIE AGLISPLVNL LQTAEFDIKK EAAWAISNAT
401: SGGSHEQIKF LVSQNCIKPL CDLLVCPDPR IVTVCLEGLE NILKVGEAEK ANTEGINYYA QLIDDAEGLE KIENLQSHDN NEIYEKAVKI LETYWLEEED
501: ETVPAGDGAQ NEFNFGGNDI QLPSGGFKFG

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.