CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 27780359
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH37030	Soybean	endoplasmic reticulum, mitochondrion	98.68	98.68
KRH02317	Soybean	cytosol	94.92	95.09
KRH50772	Soybean	cytosol, endoplasmic reticulum	80.79	94.7
VIT_05s0077g01430.t01	Wine grape	cytosol	92.09	92.44
Solyc01g060470.2.1	Tomato	extracellular	89.08	89.25
PGSC0003DMT400038784	Potato	cytosol	88.89	89.22
KRH33847	Soybean	nucleus	88.51	88.35
KRG92948	Soybean	nucleus	88.51	88.35
AT4G16143.2	Thale cress	cytosol	87.01	86.36
KRH68461	Soybean	nucleus	85.69	85.53
KRG96743	Soybean	nucleus	85.12	84.96
CDY34430	Canola	cytosol	84.56	84.72
CDY32215	Canola	cytosol	84.37	84.53
Bra033534.1-P	Field mustard	cytosol	84.37	84.53
CDY09716	Canola	cytosol	85.12	84.49
Bra012741.1-P	Field mustard	cytosol	56.5	84.03
CDY22779	Canola	cytosol	84.18	83.71
Bra038043.1-P	Field mustard	cytosol	84.18	83.71
CDX90544	Canola	cytosol	85.12	83.7
AT3G06720.2	Thale cress	cytosol	83.8	83.65
CDY52043	Canola	cytosol	83.99	83.52
Bra012740.1-P	Field mustard	cytosol	24.11	81.01
Zm00001d042015_P001	Maize	cytosol	21.09	67.47
AT5G49310.1	Thale cress	cytosol	64.41	65.9
Zm00001d040153_P004	Maize	cytosol	20.15	58.47
KRG96699	Soybean	cytosol	49.91	54.75
KRG99893	Soybean	cytosol	44.44	53.88
KRG99898	Soybean	cytosol	44.07	53.06
KRG99895	Soybean	cytosol, plastid	47.46	51.53
KRG99853	Soybean	cytosol, plastid	47.46	51.53
CDY32170	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.51	51.38
KRH68429	Soybean	cytosol, plastid	50.28	51.15
KRG99088	Soybean	cytosol	39.36	46.97
KRG96700	Soybean	cytosol	40.87	42.8
Zm00001d024033_P002	Maize	plastid	14.88	36.41
KRH19830	Soybean	cytosol, plastid	28.81	29.59
KRH32422	Soybean	plastid	10.92	28.86

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	EntrezGene:100808498	MapMan:23.5.1.3	EMBL:ACUP02009259	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:Arm_3	InterPro:Armadillo	EnsemblPlantsGene:GLYMA_15G144800	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005635	GO:GO:0005643	GO:GO:0005654	GO:GO:0005737	GO:GO:0005829	GO:GO:0006606
GO:GO:0006607	GO:GO:0006810	GO:GO:0008139	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	UniProt:I1MGI7	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975
InterPro:Importin-a_IBB	InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	EnsemblPlants:KRH11998	ProteinID:KRH11998	ProteinID:KRH11998.1
PFAM:PF00514	PFAM:PF01749	PFAM:PF16186	PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214
PANTHER:PTHR23316	PANTHER:PTHR23316:SF22	SMART:SM00185	SUPFAM:SSF48371	UniParc:UPI0001D65365	:

Description

hypothetical protein

Coordinates

chr15:+:11913688..11917653

Molecular Weight (calculated)

58632.9 Da

IEP (calculated)

4.912

GRAVY (calculated)

-0.250

Length

531 amino acids

Sequence
(BLAST)

001: MSLRPNARTE VRRNRYKVAV DADEGRRRRE DNMVEIRKSK REESLQKKRR EGLQAQQQFP TPLQASSIVE KKLESLPAMV AGVWSDDNSQ QLEATTQFRK
101: LLSIERSPPI EEVIQAGVVP RFVEFLVRED FPQLQFEAAW ALTNIASGTS ENTKVVIDHG AVPIFVKLLS SPSDDVREQA VWALGNVAGD SPRCRDLVLS
201: HGALIPLLAQ LNEHAKLSML RNATWTLSNF CRGKPQPPFE QVRAALPALE RLVFSNDEEV LTDACWALSY LSDGTNDKIQ AVIEAGVCPR LVQLLLHPSP
301: SVLIPALRTV GNIVTGDDMQ TQTIINHGAL PCLLSLLTHN HKKSIKKEAC WTISNITAGN RDQIQAVIEA GLIAPLVNLL QNAEFDIKKE AAWAISNATS
401: GGTHEQIKYL VSQGCIKPLC DLLVCPDPRI VTVCLEGLEN ILKVGEAEKS LGNTGDVNLY AQMIDEAEGL EKIENLQSHD NNEIYEKAVK ILETYWLEDD
501: DETLPAGDGA QPGFNFGNND LPVPSGGFNF S

Best Arabidopsis Sequence Match ( AT4G16143.1 )
(BLAST)

001: MSLRPNAKTE VRRNRYKVAV DAEEGRRRRE DNMVEIRKSK REESLQKKRR EGLQANQLPQ FAPSPVPASS TVEKKLESLP AMVGGVWSDD RSLQLEATTQ
101: FRKLLSIERS PPIEEVIDAG VVPRFVEFLT REDYPQLQFE AAWALTNIAS GTSENTKVVI EHGAVPIFVQ LLASQSDDVR EQAVWALGNV AGDSPRCRDL
201: VLGQGALIPL LSQLNEHAKL SMLRNATWTL SNFCRGKPQP PFDQVRPALP ALERLIHSTD EEVLTDACWA LSYLSDGTND KIQSVIEAGV VPRLVELLQH
301: QSPSVLIPAL RSIGNIVTGD DLQTQCVISH GALLSLLSLL THNHKKSIKK EACWTISNIT AGNRDQIQAV CEAGLICPLV NLLQNAEFDI KKEAAWAISN
401: ATSGGSPDQI KYMVEQGVVK PLCDLLVCPD PRIITVCLEG LENILKVGEA EKVTGNTGDV NFYAQLIDDA EGLEKIENLQ SHDNSEIYEK AVKILETYWL
501: EEEDETLPPG DPSAQGFQFG GGNDAAVPPG GFNFQ

Arabidopsis Description

IMPA2Importin subunit alpha-2 [Source:UniProtKB/Swiss-Prot;Acc:F4JL11]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.