Factsheet for Bra033342.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89948	Canola	cytosol	99.81	99.81
AT1G02690.2	Thale cress	cytosol	76.2	73.65
VIT_07s0005g01100.t01	Wine grape	cytosol	70.44	69.38
Bra008559.1-P	Field mustard	cytosol	69.29	67.98
TraesCS3A01G172000.1	Wheat	golgi, nucleus	68.14	67.75
TraesCS3D01G178500.1	Wheat	cytosol	68.14	67.75
Solyc06g009750.2.1	Tomato	nucleus	68.14	67.36
PGSC0003DMT400018802	Potato	cytosol	67.95	67.17
Bra012741.1-P	Field mustard	cytosol	45.87	66.95
Os01t0253300-01	Rice	cytosol	67.37	66.73
HORVU3Hr1G034750.5	Barley	cytosol	68.14	66.6
Bra033534.1-P	Field mustard	cytosol	67.75	66.6
KXG32187	Sorghum	cytosol	67.37	66.48
Zm00001d040274_P001	Maize	cytosol	66.6	65.6
Zm00001d008345_P003	Maize	cytosol	66.6	65.47
Bra038043.1-P	Field mustard	cytosol	66.99	65.36
TraesCS3B01G202800.2	Wheat	cytosol	66.79	64.8
Bra000891.1-P	Field mustard	cytosol	63.34	63.71
Bra012740.1-P	Field mustard	cytosol	18.62	61.39
Bra018570.1-P	Field mustard	cytosol	62.19	59.78
Bra020649.1-P	Field mustard	cytosol	56.81	55.64
Bra039416.1-P	Field mustard	cytosol	45.49	47.49
Bra030765.1-P	Field mustard	cytosol	61.8	42.71
Bra030771.1-P	Field mustard	cytosol	30.71	36.78
PGSC0003DMT400076768	Potato	cytosol, extracellular, mitochondrion, plastid	6.14	35.96
Bra028852.1-P	Field mustard	cytosol	27.45	27.13
Bra009550.1-P	Field mustard	plastid	13.63	24.32

Protein Annotations

Gene3D:1.20.5.690	Gene3D:1.25.10.10	MapMan:23.5.1.3	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:Arm_3
InterPro:Armadillo	EnsemblPlantsGene:Bra033342	EnsemblPlants:Bra033342.1	EnsemblPlants:Bra033342.1-P	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0006606	GO:GO:0006810	GO:GO:0008150	GO:GO:0008565	GO:GO:0015031
GO:GO:0061608	InterPro:IPR000225	InterPro:IPR002652	InterPro:IPR011989	InterPro:IPR036975	InterPro:Importin-a_IBB
InterPro:Importin-a_IBB_sf	InterPro:Importing_su_alpha	UniProt:M4EX07	PFAM:PF00514	PFAM:PF01749	PFAM:PF16186
PIRSF:PIRSF005673	PFscan:PS50176	PFscan:PS51214	PANTHER:PTHR23316	PANTHER:PTHR23316:SF53	SMART:SM00185
SUPFAM:SSF48371	UniParc:UPI0002544DA5	SEG:seg	:	:	:

Description

AT1G02690 (E=3e-203) IMPA-6 | IMPA-6 (IMPORTIN ALPHA ISOFORM 6); binding / protein transporter

Coordinates

chrA10:-:4139171..4141830

Molecular Weight (calculated)

57791.9 Da

IEP (calculated)

5.168

GRAVY (calculated)

-0.257

Length

521 amino acids

Sequence
(BLAST)

001: MSLKPSARTE VRRNMYKVSV DADEGRRRRE GDMVEIRKNK REENLQKKRR EGLTAPIAQQ GQDLYSYERL EKITQLAAGA TSEDRSLQLE ATIGIRKLLS
101: VERNPPINEV IQSGVVPRLV QFLSVDFFEL QFEAAWALTN IASGTSDNTK VIIDSGAIPD FVRLFASKSD EVREQSVWAV GNVAGDSPKC RDFVLSCEAM
201: MPLLAQFNEH TKPSMLRNAA WTLSNFCRGK PAPALKQTKP ALPVLERLLH SNDDEVLTDA CWTLSYLSDG TNDRIQTVIN AGVIPSLVSL LAHHLPSVLI
301: PAIRAIGNIV TGDDMMTQEV LNHQALPHLL SILTRTYKRS IKKEACWAIS NITAGNTSQI QQVIEAGIIQ PLIYMLHTAE FEIKREAVWA VSNLTSGGNH
401: DQIKFLVDQG CIKPLCDLLT CPDPLTVTVI LEALENILKV GEAEMNQGNT GGFNIYVQMI DDAEGLEKIE NLQRHNNNEI YEKAVQILSS YWTDEDGNEH
501: DNGFAFGNQS GNASTGGFNF G

Best Arabidopsis Sequence Match ( AT1G02690.1 )
(BLAST)

001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQTKAALPA LERLLHSTDE EVLTDASWAL SYLSDGTNEK IQTVIDAGVI PRLVQLLAHP
301: SPSVLIPALR TIGNIVTGDD IQTQAVISSQ ALPGLLNLLK NTYKKSIKKE ACWTISNITA GNTSQIQEVF QAGIIRPLIN LLEIGEFEIK KEAVWAISNA
401: TSGGNHDQIK FLVSQGCIRP LCDLLPCPDP RVVTVTLEGL ENILKVGEAE KNLGNTGNDN LYAQMIEDAD GLDKIENLQS HDNNEIYEKA VKILESYWAA
501: DDEEEDIGGV DAPENVQSSG FQFGNQSGNA PTGGFNFG

Arabidopsis Description

IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.