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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra033342.1-P Field mustard cytosol 73.65 76.2
CDX89948 Canola cytosol 73.47 76.01
VIT_07s0005g01100.t01 Wine grape cytosol 74.4 75.8
AT4G02150.1 Thale cress cytosol 73.65 74.76
TraesCS3A01G172000.1 Wheat golgi, nucleus 70.69 72.71
TraesCS3D01G178500.1 Wheat cytosol 70.69 72.71
Solyc06g009750.2.1 Tomato nucleus 70.13 71.73
PGSC0003DMT400018802 Potato cytosol 69.94 71.54
HORVU3Hr1G034750.5 Barley cytosol 70.69 71.48
KXG32187 Sorghum cytosol 69.94 71.4
Os01t0253300-01 Rice cytosol 69.57 71.29
Zm00001d040274_P001 Maize cytosol 69.76 71.08
Zm00001d008345_P003 Maize cytosol 69.39 70.57
AT3G06720.2 Thale cress cytosol 69.39 70.3
AT4G16143.2 Thale cress cytosol 69.76 70.28
TraesCS3B01G202800.2 Wheat cytosol 69.02 69.27
AT1G09270.1 Thale cress cytosol 66.42 66.54
AT5G49310.1 Thale cress cytosol 56.22 58.38
AT3G05720.1 Thale cress cytosol 53.62 54.73
CDY15260 Canola cytosol 72.54 50.45
AT5G52000.1 Thale cress cytosol 40.82 49.89
AT1G32880.1 Thale cress cytosol 16.33 48.09
AT5G49305.2 Thale cress cytosol 32.28 45.31
PGSC0003DMT400076768 Potato cytosol, extracellular, mitochondrion, plastid 6.31 38.2
AT5G03070.1 Thale cress cytosol, plastid 28.57 29.67
Protein Annotations
Gene3D:1.20.5.690Gene3D:1.25.10.10MapMan:23.5.1.3EntrezGene:839517ProteinID:AEE27459.1InterPro:ARM-like
InterPro:ARM-type_foldArrayExpress:AT1G02690EnsemblPlantsGene:AT1G02690RefSeq:AT1G02690TAIR:AT1G02690RefSeq:AT1G02690-TAIR-G
EnsemblPlants:AT1G02690.2TAIR:AT1G02690.2InterPro:Arm_3InterPro:ArmadilloUniProt:F4HXL3GO:GO:0003674
GO:GO:0005215GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0005737GO:GO:0006606GO:GO:0006810GO:GO:0008150GO:GO:0008565
GO:GO:0015031GO:GO:0061608Symbol:IMPA-6InterPro:IPR000225InterPro:IPR002652InterPro:IPR011989
InterPro:IPR036975InterPro:Importin-a_IBBInterPro:Importin-a_IBB_sfInterPro:Importing_su_alphaRefSeq:NP_973743.1PFAM:PF00514
PFAM:PF01749PFAM:PF16186PIRSF:PIRSF005673PO:PO:0000013PO:PO:0000037PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007064PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PFscan:PS50176
PFscan:PS51214PANTHER:PTHR23316PANTHER:PTHR23316:SF53SMART:SM00185SUPFAM:SSF48371UniParc:UPI000034F409
SEG:seg:::::
Description
IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
Coordinates
chr1:+:584260..587219
Molecular Weight (calculated)
59520.4 Da
IEP (calculated)
4.775
GRAVY (calculated)
-0.365
Length
539 amino acids
Sequence
(BLAST)
001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQQTKAALP ALERLLHSTD EEVLTDASWA LSYLSDGTNE KIQTVIDAGV IPRLVQLLAH
301: PSPSVLIPAL RTIGNIVTGD DIQTQAVISS QALPGLLNLL KNTYKKSIKK EACWTISNIT AGNTSQIQEV FQAGIIRPLI NLLEIGEFEI KKEAVWAISN
401: ATSGGNHDQI KFLVSQGCIR PLCDLLPCPD PRVVTVTLEG LENILKVGEA EKNLGNTGND NLYAQMIEDA DGLDKIENLQ SHDNNEIYEK AVKILESYWA
501: ADDEEEDIGG VDAPENVQSS GFQFGNQSGN APTGGFNFG
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.