Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Bra033342.1-P | Field mustard | cytosol | 73.65 | 76.2 |
CDX89948 | Canola | cytosol | 73.47 | 76.01 |
VIT_07s0005g01100.t01 | Wine grape | cytosol | 74.4 | 75.8 |
AT4G02150.1 | Thale cress | cytosol | 73.65 | 74.76 |
TraesCS3A01G172000.1 | Wheat | golgi, nucleus | 70.69 | 72.71 |
TraesCS3D01G178500.1 | Wheat | cytosol | 70.69 | 72.71 |
Solyc06g009750.2.1 | Tomato | nucleus | 70.13 | 71.73 |
PGSC0003DMT400018802 | Potato | cytosol | 69.94 | 71.54 |
HORVU3Hr1G034750.5 | Barley | cytosol | 70.69 | 71.48 |
KXG32187 | Sorghum | cytosol | 69.94 | 71.4 |
Os01t0253300-01 | Rice | cytosol | 69.57 | 71.29 |
Zm00001d040274_P001 | Maize | cytosol | 69.76 | 71.08 |
Zm00001d008345_P003 | Maize | cytosol | 69.39 | 70.57 |
AT3G06720.2 | Thale cress | cytosol | 69.39 | 70.3 |
AT4G16143.2 | Thale cress | cytosol | 69.76 | 70.28 |
TraesCS3B01G202800.2 | Wheat | cytosol | 69.02 | 69.27 |
AT1G09270.1 | Thale cress | cytosol | 66.42 | 66.54 |
AT5G49310.1 | Thale cress | cytosol | 56.22 | 58.38 |
AT3G05720.1 | Thale cress | cytosol | 53.62 | 54.73 |
CDY15260 | Canola | cytosol | 72.54 | 50.45 |
AT5G52000.1 | Thale cress | cytosol | 40.82 | 49.89 |
AT1G32880.1 | Thale cress | cytosol | 16.33 | 48.09 |
AT5G49305.2 | Thale cress | cytosol | 32.28 | 45.31 |
PGSC0003DMT400076768 | Potato | cytosol, extracellular, mitochondrion, plastid | 6.31 | 38.2 |
AT5G03070.1 | Thale cress | cytosol, plastid | 28.57 | 29.67 |
Protein Annotations
Gene3D:1.20.5.690 | Gene3D:1.25.10.10 | MapMan:23.5.1.3 | EntrezGene:839517 | ProteinID:AEE27459.1 | InterPro:ARM-like |
InterPro:ARM-type_fold | ArrayExpress:AT1G02690 | EnsemblPlantsGene:AT1G02690 | RefSeq:AT1G02690 | TAIR:AT1G02690 | RefSeq:AT1G02690-TAIR-G |
EnsemblPlants:AT1G02690.2 | TAIR:AT1G02690.2 | InterPro:Arm_3 | InterPro:Armadillo | UniProt:F4HXL3 | GO:GO:0003674 |
GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006606 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008565 |
GO:GO:0015031 | GO:GO:0061608 | Symbol:IMPA-6 | InterPro:IPR000225 | InterPro:IPR002652 | InterPro:IPR011989 |
InterPro:IPR036975 | InterPro:Importin-a_IBB | InterPro:Importin-a_IBB_sf | InterPro:Importing_su_alpha | RefSeq:NP_973743.1 | PFAM:PF00514 |
PFAM:PF01749 | PFAM:PF16186 | PIRSF:PIRSF005673 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
PO:PO:0007064 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50176 |
PFscan:PS51214 | PANTHER:PTHR23316 | PANTHER:PTHR23316:SF53 | SMART:SM00185 | SUPFAM:SSF48371 | UniParc:UPI000034F409 |
SEG:seg | : | : | : | : | : |
Description
IMPA-6Importin subunit alpha [Source:UniProtKB/TrEMBL;Acc:F4HXL3]
Coordinates
chr1:+:584260..587219
Molecular Weight (calculated)
59520.4 Da
IEP (calculated)
4.775
GRAVY (calculated)
-0.365
Length
539 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYKPSAKTE VRRNRYKVSV DADEGRRRRE DNMVEIRKNK REENLQKKRR EGFNPSMASQ PGQDFSSSLP TETRLENIQQ MIAGVMSEDR DLQLEATASF
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQQTKAALP ALERLLHSTD EEVLTDASWA LSYLSDGTNE KIQTVIDAGV IPRLVQLLAH
301: PSPSVLIPAL RTIGNIVTGD DIQTQAVISS QALPGLLNLL KNTYKKSIKK EACWTISNIT AGNTSQIQEV FQAGIIRPLI NLLEIGEFEI KKEAVWAISN
401: ATSGGNHDQI KFLVSQGCIR PLCDLLPCPD PRVVTVTLEG LENILKVGEA EKNLGNTGND NLYAQMIEDA DGLDKIENLQ SHDNNEIYEK AVKILESYWA
501: ADDEEEDIGG VDAPENVQSS GFQFGNQSGN APTGGFNFG
101: RRLLSIERNP PINEVVQSGV VPHIVQFLSR DDFTQLQFEA AWALTNIASG TSENTRVIID SGAVPLFVKL LSSASEEVRE QAVWALGNVA GDSPKCRDHV
201: LSCEAMMSLL AQFHEHSKLS MLRNATWTLS NFCRGKPQPA FEQQTKAALP ALERLLHSTD EEVLTDASWA LSYLSDGTNE KIQTVIDAGV IPRLVQLLAH
301: PSPSVLIPAL RTIGNIVTGD DIQTQAVISS QALPGLLNLL KNTYKKSIKK EACWTISNIT AGNTSQIQEV FQAGIIRPLI NLLEIGEFEI KKEAVWAISN
401: ATSGGNHDQI KFLVSQGCIR PLCDLLPCPD PRVVTVTLEG LENILKVGEA EKNLGNTGND NLYAQMIEDA DGLDKIENLQ SHDNNEIYEK AVKILESYWA
501: ADDEEEDIGG VDAPENVQSS GFQFGNQSGN APTGGFNFG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.