Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G52000.1 | Thale cress | cytosol | 60.11 | 24.94 |
| AT5G49305.2 | Thale cress | cytosol | 49.73 | 23.7 |
| AT3G06720.2 | Thale cress | cytosol | 57.38 | 19.74 |
| AT4G16143.2 | Thale cress | cytosol | 57.38 | 19.63 |
| AT5G49310.1 | Thale cress | cytosol | 54.64 | 19.27 |
| CDY05638 | Canola | cytosol | 55.74 | 19.14 |
| CDY33917 | Canola | cytosol | 55.19 | 18.98 |
| Bra020649.1-P | Field mustard | cytosol | 54.64 | 18.8 |
| AT4G02150.1 | Thale cress | cytosol | 51.37 | 17.7 |
| AT1G02690.2 | Thale cress | cytosol | 48.09 | 16.33 |
| AT1G09270.1 | Thale cress | cytosol | 47.54 | 16.17 |
| AT3G05720.1 | Thale cress | cytosol | 44.81 | 15.53 |
| AT5G03070.1 | Thale cress | cytosol, plastid | 20.77 | 7.32 |
| VIT_15s0021g00390.t01 | Wine grape | cytosol | 1.09 | 3.7 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:35.1 | EntrezGene:840182 | ProteinID:AEE31536.1 | InterPro:ARM-like | InterPro:ARM-type_fold |
| ArrayExpress:AT1G32880 | EnsemblPlantsGene:AT1G32880 | RefSeq:AT1G32880 | TAIR:AT1G32880 | RefSeq:AT1G32880-TAIR-G | EnsemblPlants:AT1G32880.1 |
| TAIR:AT1G32880.1 | InterPro:Arm_3 | InterPro:Armadillo | Unigene:At.40043 | UniProt:F4HPE4 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR000225 | InterPro:IPR011989 | RefSeq:NP_174565.1 | PFAM:PF00514 |
| PFAM:PF16186 | PANTHER:PTHR23316 | PANTHER:PTHR23316:SF22 | SMART:SM00185 | SUPFAM:SSF48371 | UniParc:UPI0000162F60 |
Description
ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HPE4]
Coordinates
chr1:-:11913928..11914735
Molecular Weight (calculated)
20806.1 Da
IEP (calculated)
4.404
GRAVY (calculated)
-0.218
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNVSYITCA EDMRGPIETV IRSGAVHRLI QFLLDESFPK LQSVIDANLI PTLVKLTQNA EFDMKKESVC AISNATLLGS HDQIKYMVEQ SCIKPLCDIL
101: FCPDVKTILK CLDGMENTLK VGEAEKNAGD DVSWYTRLIE AEGLDKILNL QRHENIEIYD KALKILQTYW LEEDDEDIQQ PPS
101: FCPDVKTILK CLDGMENTLK VGEAEKNAGD DVSWYTRLIE AEGLDKILNL QRHENIEIYD KALKILQTYW LEEDDEDIQQ PPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.