Factsheet for TraesCS6D01G169100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G178100.5
TraesCS4B01G138200.1
TraesCS4B01G326700.1
TraesCS4D01G132900.3
TraesCS4D01G323400.1
TraesCS5A01G498700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	TraesCS4B01G326700.1	AT2G47450.1	21798944
AT1G52560.1	TraesCS4D01G323400.1	AT2G47450.1	21798944
AT1G52560.1	TraesCS5A01G498700.1	AT2G47450.1	21798944
AT1G52560.1	TraesCS4A01G178100.5	AT3G06430.1	21798944
AT1G52560.1	TraesCS4B01G138200.1	AT3G06430.1	21798944
AT1G52560.1	TraesCS4D01G132900.3	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G181700.1	Wheat	plastid	96.02	91.29
TraesCS6B01G210600.1	Wheat	mitochondrion	91.24	88.08
HORVU6Hr1G038320.1	Barley	mitochondrion	38.65	61.39
Zm00001d015777_P001	Maize	mitochondrion	51.39	61.14
EES06474	Sorghum	mitochondrion	51.79	59.63
Os02t0201000-02	Rice	mitochondrion	42.63	48.86
Solyc12g042830.1.1	Tomato	plastid	15.14	48.1
KRH47454	Soybean	cytosol	17.53	47.83
CDY66886	Canola	cytosol	28.29	37.17
Bra018972.1-P	Field mustard	cytosol	28.29	37.17
GSMUA_Achr9P28520_001	Banana	mitochondrion	29.48	32.31
KRH44453	Soybean	mitochondrion	28.69	32.0
CDY40150	Canola	mitochondrion	29.48	31.9
VIT_09s0002g06790.t01	Wine grape	mitochondrion	29.08	31.33
AT1G52560.1	Thale cress	mitochondrion	27.89	30.17
PGSC0003DMT400073689	Potato	mitochondrion	27.09	29.69
TraesCS4D01G226000.1	Wheat	mitochondrion	25.9	27.31
TraesCS5D01G266000.1	Wheat	plastid	22.71	23.08
CDY66885	Canola	mitochondrion	1.2	12.5

Protein Annotations

EnsemblPlants:TraesCS6D01G169100.1	EnsemblPlantsGene:TraesCS6D01G169100	Gene3D:2.60.40.790	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408
GO:GO:0009628	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978
PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	PFAM:PF00011	PFscan:PS01031	SEG:seg	SUPFAM:SSF49764
TIGR:cd06464	MapMan:19.1.8.9	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:155046403..155047239

Molecular Weight (calculated)

27415.3 Da

IEP (calculated)

7.183

GRAVY (calculated)

-0.426

Length

251 amino acids

Sequence
(BLAST)

001: MQPVSMCSSR ATKEQSDEEH AATHRAEFVT GHMALARLCL KKALAGRAAA MARPASASSH GGMDLRSLFS SAAADSAATR APLEGETNGR EVAVADRSSS
101: ATARGGRWPW RDLRDFVPFR LVNGLGSALS HVAETLSRPL ERWRPLFGKV REDEERYRLR FEVPGLGKDD VRVTVEDGAL VIRGEKKVED EHGGDCEWWS
201: ASSYGCYHAS LLLPEDARVD GIAAEVKDGV LYVTVPRVPG RERSVTEVKV Q

Best Arabidopsis Sequence Match ( AT1G52560.2 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNGNTLIQA
101: TENMNRIFDN FNVNPFQLMG QVKEQDDCYK LRYEVPGLTK EDVKITVNDG ILTIKGDHKA EEEKGSPEED EYWSSKSYGY YNTSLSLPDD AKVEDIKAEL
201: KNGVLNLVIP RTEKPKKNVQ EISVE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.