CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92072
KRH02371
KRH02451
KRH29099
KRH37687

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	KRG92072	AT2G47450.1	21798944
AT1G52560.1	KRH29099	AT2G47450.1	21798944
AT1G52560.1	KRH02371	AT3G06430.1	21798944
AT1G52560.1	KRH02451	AT3G06430.1	21798944
AT1G52560.1	KRH37687	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47454	Soybean	cytosol	31.56	77.17
Solyc12g042830.1.1	Tomato	plastid	20.44	58.23
Bra018972.1-P	Field mustard	cytosol	44.0	51.83
CDY66886	Canola	cytosol	44.0	51.83
CDY40150	Canola	mitochondrion	52.44	50.86
AT1G52560.1	Thale cress	mitochondrion	51.56	50.0
PGSC0003DMT400073689	Potato	mitochondrion	50.67	49.78
VIT_09s0002g06790.t01	Wine grape	mitochondrion	51.11	49.36
Zm00001d015777_P001	Maize	mitochondrion	35.11	37.44
EES06474	Sorghum	mitochondrion	35.56	36.7
GSMUA_Achr9P28520_001	Banana	mitochondrion	35.56	34.93
TraesCS6D01G169100.1	Wheat	cytosol	32.0	28.69
KRH53604	Soybean	plastid	28.0	27.27
Os02t0201000-02	Rice	mitochondrion	26.22	26.94
KRG97479	Soybean	cytosol	17.78	26.67
TraesCS6A01G181700.1	Wheat	plastid	31.11	26.52
TraesCS6B01G210600.1	Wheat	mitochondrion	30.22	26.15
KRH64320	Soybean	plastid	26.22	25.54
HORVU6Hr1G038320.1	Barley	mitochondrion	16.44	23.42
KRH31411	Soybean	cytosol, plastid	23.56	22.55
KRH46215	Soybean	plastid	21.33	21.24
KRG98734	Soybean	plastid	18.67	18.26

Protein Annotations

MapMan:19.1.8.9	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	UniProt:A0A0R4J3X4	EMBL:ACUP02004928	EnsemblPlantsGene:GLYMA_08G212000
InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	EnsemblPlants:KRH44453	ProteinID:KRH44453
ProteinID:KRH44453.1	ProteinID:KRH44454.1	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF173
SUPFAM:SSF49764	UniParc:UPI00018C7197	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:17115866..17117900

Molecular Weight (calculated)

25664.2 Da

IEP (calculated)

7.658

GRAVY (calculated)

-0.824

Length

225 amino acids

Sequence
(BLAST)

001: MALARLALKN LQQRVCASSF LSGNVHKQRW NNELLRRFGT AAGDKGKSEG TEVAVTEGKK SNRMFPRRRG RRWAWRNEDH DDFPPALYEL FPSGLGSALM
101: QASNNINRLF ENMNLTPWSL TSGRVKEKDD HYKLRYEMPG IAKEDVKITI DDDGVLTIKG EHKEEKDDDE QYWSSSSYGY YNTSLILPDD AKADDIKAEL
201: KDGVLTLIIP KTQNPQKDVK QVTIE

Best Arabidopsis Sequence Match ( AT1G52560.1 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.