Factsheet for Os02t0201000-02

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0131900-01
Os03t0309800-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	Os03t0131900-01	AT2G47450.1	21798944
AT1G52560.1	Os03t0309800-02	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015777_P001	Maize	mitochondrion	43.84	45.5
EES06474	Sorghum	mitochondrion	45.21	45.41
HORVU6Hr1G038320.1	Barley	mitochondrion	31.05	43.04
TraesCS6D01G169100.1	Wheat	cytosol	48.86	42.63
TraesCS6B01G210600.1	Wheat	mitochondrion	49.32	41.54
TraesCS6A01G181700.1	Wheat	plastid	48.86	40.53
KRH47454	Soybean	cytosol	16.89	40.22
Solyc12g042830.1.1	Tomato	plastid	13.24	36.71
GSMUA_Achr9P28520_001	Banana	mitochondrion	31.96	30.57
CDY66886	Canola	cytosol	24.66	28.27
Bra018972.1-P	Field mustard	cytosol	24.66	28.27
VIT_09s0002g06790.t01	Wine grape	mitochondrion	28.77	27.04
KRH44453	Soybean	mitochondrion	26.94	26.22
CDY40150	Canola	mitochondrion	26.94	25.43
AT1G52560.1	Thale cress	mitochondrion	24.2	22.84
PGSC0003DMT400073689	Potato	mitochondrion	23.74	22.71
Os03t0245800-02	Rice	plastid	24.2	22.08
Os03t0835700-00	Rice	plastid	11.42	13.44
CDY66885	Canola	mitochondrion	1.37	12.5

Protein Annotations

EntrezGene:107278626	Gene3D:2.60.40.790	MapMan:35.1	InterPro:A-crystallin/Hsp20_dom	EMBL:AK106682	EMBL:AP004869
UniProt:B7EZJ7	ProteinID:BAS77516.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006950	GO:GO:0008150	GO:GO:0009408	GO:GO:0009628	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	EnsemblPlantsGene:Os02g0201000	EnsemblPlants:Os02t0201000-02	PFAM:PF00011
PFscan:PS01031	PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	SUPFAM:SSF49764	UniParc:UPI000188AEDA	RefSeq:XP_015627533.1
SEG:seg	:	:	:	:	:

Description

HSP23.6Conserved hypothetical protein. (Os02t0201000-01);Similar to 23.6 kDa heat shock protein, mitochondrial. (Os02t0201000-02)

Coordinates

chr2:-:5639106..5644543

Molecular Weight (calculated)

23592.9 Da

IEP (calculated)

7.996

GRAVY (calculated)

-0.320

Length

219 amino acids

Sequence
(BLAST)

001: MALARQCLSK RLAAGCALAR PLHAASPVAA AAANSHGPLN FRALFSSAGA DAAATTGGCA PAKGDGHSRE VAVVDRSRRR WPWRDLRDFV PLRLVDGIGS
101: ALSQVAETLT RPLTGKVRED EERYRLRFEV PGLGKDDVRV YVDDGVLAIH GEKRDVVEED RGRDGDGECW AAATYHAGLL LPEDAVAEGI TAEVRDGVLH
201: VTVPRSPERK RSVTEVKVR

Best Arabidopsis Sequence Match ( AT1G52560.1 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.