CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77337
CDY05264
CDY24692
CDY70592

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G52560.1	CDX77337	AT2G47450.1	21798944
AT1G52560.1	CDY70592	AT2G47450.1	21798944
AT1G52560.1	CDY05264	AT3G06430.1	21798944
AT1G52560.1	CDY24692	AT3G06430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018972.1-P	Field mustard	cytosol	79.74	96.86
CDY66886	Canola	cytosol	79.74	96.86
AT1G52560.1	Thale cress	mitochondrion	80.17	80.17
KRH47454	Soybean	cytosol	25.86	65.22
KRH44453	Soybean	mitochondrion	50.86	52.44
VIT_09s0002g06790.t01	Wine grape	mitochondrion	49.14	48.93
GSMUA_Achr9P28520_001	Banana	mitochondrion	39.22	39.74
Zm00001d015777_P001	Maize	mitochondrion	34.05	37.44
EES06474	Sorghum	mitochondrion	34.05	36.24
TraesCS6D01G169100.1	Wheat	cytosol	31.9	29.48
TraesCS6B01G210600.1	Wheat	mitochondrion	31.47	28.08
TraesCS6A01G181700.1	Wheat	plastid	31.47	27.65
Os02t0201000-02	Rice	mitochondrion	25.43	26.94
CDY55343	Canola	plastid	25.43	26.34
CDY30235	Canola	plastid	25.43	26.34
CDY19036	Canola	plastid	25.43	26.34
HORVU6Hr1G038320.1	Barley	mitochondrion	17.67	25.95
CDY66885	Canola	mitochondrion	0.43	4.17

Protein Annotations

EnsemblPlants:CDY40150	EnsemblPlantsGene:GSBRNA2T00069083001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF173	PFAM:PF00011	PFscan:PS01031
ProteinID:CDY40150	ProteinID:CDY40150.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0004EE0A3E	UniProt:A0A078HNN8
MapMan:19.1.8.9	:	:	:	:	:

Description

BnaC06g05390DBnaC06g05390D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HNN8]

Coordinates

chrLK032464:+:123569..124937

Molecular Weight (calculated)

26535.4 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.823

Length

232 amino acids

Sequence
(BLAST)

001: MALARLALRN LQQKLSSTFM CPSGEKCLVG NRHSQSKLNR FMASSSGEQE EKKSTEVSVS EKKSPRRIFP RRRGRKSLWR NTDDHDYFAP ALNGFFPPSL
101: GNALMQATEN INRIFYNFDI RPSQLMGQVK EQDDCYKLRY EVPGLTKDDV KITVDNGILM IKGEHKGEEE EGSPEEDEHW SSRSYGYYNT SLSLPDDAKV
201: EEIKAELKNG VLNVVIPRME KPKKDVQEIT VE

Best Arabidopsis Sequence Match ( AT1G52560.1 )
(BLAST)

001: MALARLALRN LQQKLSPSLM GQSCERGLVG NRHNPMKLNR FMATSAGEQE DKMNTEVSVS EKKSPRQNFP RRRGRKSLWR NTDDHGYFTP TLNEFFPPTI
101: GNTLIQATEN MNRIFDNFNV NPFQLMGQVK EQDDCYKLRY EVPGLTKEDV KITVNDGILT IKGDHKAEEE KGSPEEDEYW SSKSYGYYNT SLSLPDDAKV
201: EDIKAELKNG VLNLVIPRTE KPKKNVQEIS VE

Arabidopsis Description

HSP26.526.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SSQ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.