CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30235	Canola	plastid	98.21	98.21
Bra026317.1-P	Field mustard	plastid	97.77	97.77
CDY55343	Canola	plastid	97.32	97.32
AT4G27670.1	Thale cress	plastid	69.2	68.28
KRH53604	Soybean	plastid	58.48	56.71
KRH64320	Soybean	plastid	58.48	56.71
VIT_16s0098g01060.t01	Wine grape	plastid	56.7	55.95
PGSC0003DMT400008351	Potato	plastid	53.12	51.07
Solyc03g082420.2.1	Tomato	plastid	53.57	51.06
GSMUA_Achr2P12540_001	Banana	plastid	49.55	47.23
EER95179	Sorghum	plastid	49.11	45.08
TraesCS4A01G068200.1	Wheat	mitochondrion	47.32	44.54
Zm00001d028408_P001	Maize	plastid	46.43	43.33
TraesCS4B01G225400.1	Wheat	plastid	46.88	43.21
Os03t0245800-02	Rice	plastid	45.98	42.92
TraesCS4D01G226000.1	Wheat	mitochondrion	45.54	42.86
TraesCS4A01G068300.1	Wheat	plastid	45.54	42.68
GSMUA_Achr4P28560_001	Banana	plastid	40.62	38.24
HORVU4Hr1G063350.1	Barley	mitochondrion	47.32	34.87
CDY66886	Canola	cytosol	24.55	28.8
CDY40150	Canola	mitochondrion	26.34	25.43
Os03t0835700-00	Rice	plastid	19.2	23.12
CDY66885	Canola	mitochondrion	1.34	12.5

Protein Annotations

EnsemblPlants:CDY19036	EnsemblPlantsGene:GSBRNA2T00006295001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF167	PFAM:PF00011	PFscan:PS01031
ProteinID:CDY19036	ProteinID:CDY19036.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0004EEEF4C	UniProt:A0A078G192
MapMan:19.1.8.11	:	:	:	:	:

Description

BnaC01g20320DBnaC01g20320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G192]

Coordinates

chrLK032091:+:494885..495828

Molecular Weight (calculated)

25060.1 Da

IEP (calculated)

9.783

GRAVY (calculated)

-0.641

Length

224 amino acids

Sequence
(BLAST)

001: MASTLSFTSS LRSPLALPRS SKPTSSFSVS FPRKIPGKIR AQDQRSDSLD VVHQGQKGNQ GSSVEKKPQR LAMDVSPFGL LDPLSPMRTM RQMLDTMDRM
101: FDDAAMIVPG RSRAGGSGVS EIRAPWDMKE EEHEIKMRFD MPGLSKEDVK VSVEDNVLVI KGEQKKEDEN DSWSGRSFSS YGTRLQLPDN CEKDKIKAEL
201: KNGVLFITIP KTKVERKVVD VQIQ

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.