Factsheet for Zm00001d028408_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95179	Sorghum	plastid	85.0	83.61
TraesCS4A01G068300.1	Wheat	plastid	73.75	74.06
TraesCS4A01G068200.1	Wheat	mitochondrion	73.33	73.95
TraesCS4D01G226000.1	Wheat	mitochondrion	72.92	73.53
TraesCS4B01G225400.1	Wheat	plastid	72.92	72.02
Os03t0245800-02	Rice	plastid	71.67	71.67
HORVU4Hr1G063350.1	Barley	mitochondrion	72.5	57.24
Solyc03g082420.2.1	Tomato	plastid	47.08	48.09
AT4G27670.1	Thale cress	plastid	45.42	48.02
PGSC0003DMT400008351	Potato	plastid	46.25	47.64
KRH64320	Soybean	plastid	45.83	47.62
VIT_16s0098g01060.t01	Wine grape	plastid	45.0	47.58
KRH53604	Soybean	plastid	45.42	47.19
CDY19036	Canola	plastid	43.33	46.43
Bra026317.1-P	Field mustard	plastid	42.92	45.98
CDY55343	Canola	plastid	42.92	45.98
CDY30235	Canola	plastid	42.92	45.98
GSMUA_Achr2P12540_001	Banana	plastid	43.75	44.68
GSMUA_Achr4P28560_001	Banana	plastid	37.92	38.24
Zm00001d015777_P001	Maize	mitochondrion	25.0	28.44
Zm00001d031325_P001	Maize	plastid	28.75	27.38
Os03t0835700-00	Rice	plastid	18.33	23.66

Protein Annotations

MapMan:19.1.8.11	Gene3D:2.60.40.790	EntrezGene:542576	InterPro:A-crystallin/Hsp20_dom	EMBL:EU951996	EMBL:EU952790
EMBL:EU964533	GO:GO:0000427	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009408	GO:GO:0009416	GO:GO:0009536
GO:GO:0009628	GO:GO:0009644	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0042542
GO:GO:0042644	GO:GO:0043621	GO:GO:0101031	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR002068
InterPro:IPR008978	EMBL:L28712	ProteinID:ONL95913.1	PFAM:PF00011	PFscan:PS01031	PANTHER:PTHR11527
PANTHER:PTHR11527:SF167	UniProt:Q41815	SUPFAM:SSF49764	UniParc:UPI00000ACBC0	EnsemblPlantsGene:Zm00001d028408	EnsemblPlants:Zm00001d028408_P001
EnsemblPlants:Zm00001d028408_T001	SEG:seg	:	:	:	:

Description

heat shock protein26 heat shock protein26

Coordinates

chr1:+:33789050..33790182

Molecular Weight (calculated)

26379.5 Da

IEP (calculated)

8.497

GRAVY (calculated)

-0.535

Length

240 amino acids

Sequence
(BLAST)

001: MAAAPFAIAG RLSPVARLPV RAWRPAHGFA SSGRARSLAV ASAAQENRDN SVDVQVSQNG GNRQQGNAVQ RRPRRATALD ISPSPFGLVD PMSPMRTMRQ
101: MLDTMDRLFD DAVGFPMGTR RSPATTGDVR LPWDIVEDEK EVKMRIDMPG LARDEVKVMV EDDTLVIRGE HKKEEGAEGG SGGDGDGWWK QRSVSSYDMR
201: LALPDECDKS KVRAELKNGV LLVTVPKTEV ERKVIDVQVQ

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.