Factsheet for Zm00001d031325_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG25677	Sorghum	plastid	73.41	68.77
TraesCS5D01G266000.1	Wheat	plastid	55.95	57.09
TraesCS5B01G257000.1	Wheat	plastid	55.56	56.91
TraesCS5A01G257700.1	Wheat	plastid	55.16	55.82
GSMUA_Achr10P...	Banana	cytosol	36.51	47.42
VIT_01s0010g02290.t01	Wine grape	cytosol	32.94	45.6
GSMUA_Achr1P17060_001	Banana	plastid	37.3	42.92
KRG97479	Soybean	cytosol	25.0	42.0
Solyc05g014280.2.1	Tomato	plastid	34.92	39.82
PGSC0003DMT400031252	Potato	plastid	34.52	38.5
KRH31411	Soybean	cytosol, plastid	32.14	34.47
KRH46215	Soybean	plastid	27.78	30.97
KRG98734	Soybean	plastid	27.78	30.43
Zm00001d028408_P001	Maize	plastid	27.38	28.75
Zm00001d015777_P001	Maize	mitochondrion	23.02	27.49

Protein Annotations

Gene3D:2.60.40.790	MapMan:35.1	InterPro:A-crystallin/Hsp20_dom	EMBL:BT070180	UniProt:C0PPG1	InterPro:HSP20
InterPro:HSP20-like_chaperone	InterPro:IPR002068	InterPro:IPR008978	ProteinID:ONM02701.1	PFAM:PF00011	PFscan:PS01031
PANTHER:PTHR11527	PANTHER:PTHR11527:SF137	SUPFAM:SSF49764	UniParc:UPI000195D5E7	EnsemblPlantsGene:Zm00001d031325	EnsemblPlants:Zm00001d031325_P001
EnsemblPlants:Zm00001d031325_T001	SEG:seg	:	:	:	:

Description

25.3 kDa heat shock protein chloroplastic

Coordinates

chr1:-:186052724..186053956

Molecular Weight (calculated)

27437.1 Da

IEP (calculated)

8.967

GRAVY (calculated)

-0.605

Length

252 amino acids

Sequence
(BLAST)

001: MWHAAAAPNN LHPAVATTSS PALRRARWPI ARPSSSVKVQ SSTRNGNGSA DNLDHLQRAS KGRQQRQGAS APGPRARRVV RTTPFGLWWD SFPEARTLDQ
101: MVRTIMDADD ADTDTRFGGV VPAAAAAAPT AVPRADHGRT PWEVRERAGE YLVRFDMPGM ARDDVRVSVQ DRTLVVAAEK KQQPAADGGG DEEGDNEEEA
201: WPPASFGRYR TRVELPENVD VERIAAEVKD GVLYLTIPKL SAGAKVVNIQ VQ

Best Arabidopsis Sequence Match ( AT4G27670.1 )
(BLAST)

001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ

Arabidopsis Description

HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.