Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g014280.2.1 | Tomato | plastid | 82.3 | 84.16 |
| VIT_01s0010g02290.t01 | Wine grape | cytosol | 52.21 | 64.84 |
| GSMUA_Achr10P... | Banana | cytosol | 53.98 | 62.89 |
| KRG97479 | Soybean | cytosol | 38.5 | 58.0 |
| GSMUA_Achr1P17060_001 | Banana | plastid | 49.56 | 51.14 |
| KRH31411 | Soybean | cytosol, plastid | 50.0 | 48.09 |
| TraesCS5B01G257000.1 | Wheat | plastid | 42.48 | 39.02 |
| TraesCS5D01G266000.1 | Wheat | plastid | 42.48 | 38.87 |
| TraesCS5A01G257700.1 | Wheat | plastid | 42.04 | 38.15 |
| Zm00001d031325_P001 | Maize | plastid | 38.5 | 34.52 |
| KXG25677 | Sorghum | plastid | 38.94 | 32.71 |
| PGSC0003DMT400008351 | Potato | plastid | 32.74 | 31.76 |
| PGSC0003DMT400073689 | Potato | mitochondrion | 24.34 | 24.02 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400031252 | EnsemblPlantsGene:PGSC0003DMG400011977 | EntrezGene:102591853 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 |
| InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | ncoils:Coil | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF137 |
| PFAM:PF00011 | PFscan:PS01031 | PGSC:PGSC0003DMG400011977 | RefSeq:XP_006341764.1 | SUPFAM:SSF49764 | UniParc:UPI000296BDAF |
| UniProt:M1AVE4 | MapMan:35.1 | : | : | : | : |
Description
Small heat shock protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011977]
Coordinates
chr5:-:11646812..11649618
Molecular Weight (calculated)
26191.4 Da
IEP (calculated)
9.927
GRAVY (calculated)
-0.844
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHCLSRFPI SQPISFSNNP KYSNYSLPIS SRKHHGNYKK LKVMVVDERH NLDHLQRQNK APQPRKRSPQ MAPVGLWDRF PTARTVQQMM DTMDRVMEDP
101: LAFNGGWVAG PSTDDVGYKR GRTPWEIKES EAEYKMRFDM PGMTKEDVKV WLEEKMLVVK AEKRVKNNGK EEEEWSAKSY GKYNTRIALP ENIDFEKIKA
201: EVKDGVLYIT IPKASSNPKV FDINVQ
101: LAFNGGWVAG PSTDDVGYKR GRTPWEIKES EAEYKMRFDM PGMTKEDVKV WLEEKMLVVK AEKRVKNNGK EEEEWSAKSY GKYNTRIALP ENIDFEKIKA
201: EVKDGVLYIT IPKASSNPKV FDINVQ
001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ
Arabidopsis Description
HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.