Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0010g02290.t01 | Wine grape | cytosol | 61.86 | 65.93 |
| KRG97479 | Soybean | cytosol | 47.94 | 62.0 |
| GSMUA_Achr1P17060_001 | Banana | plastid | 68.56 | 60.73 |
| Solyc05g014280.2.1 | Tomato | plastid | 62.89 | 55.2 |
| PGSC0003DMT400031252 | Potato | plastid | 62.89 | 53.98 |
| KRH31411 | Soybean | cytosol, plastid | 60.31 | 49.79 |
| TraesCS5D01G266000.1 | Wheat | plastid | 50.0 | 39.27 |
| TraesCS5B01G257000.1 | Wheat | plastid | 48.97 | 38.62 |
| TraesCS5A01G257700.1 | Wheat | plastid | 48.45 | 37.75 |
| Zm00001d031325_P001 | Maize | plastid | 47.42 | 36.51 |
| KXG25677 | Sorghum | plastid | 47.94 | 34.57 |
| GSMUA_Achr2P12540_001 | Banana | plastid | 34.54 | 28.51 |
| GSMUA_Achr4P28560_001 | Banana | plastid | 30.93 | 25.21 |
| GSMUA_Achr9P28520_001 | Banana | mitochondrion | 20.1 | 17.03 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P16640_001 | EnsemblPlants:GSMUA_Achr10T16640_001 | EnsemblPlantsGene:GSMUA_Achr10G16640_001 | Gene3D:2.60.40.790 | InterPro:A-crystallin/Hsp20_dom | InterPro:HSP20 |
| InterPro:HSP20-like_chaperone | InterPro:IPR002068 | InterPro:IPR008978 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF137 | PFAM:PF00011 |
| PFscan:PS01031 | SEG:seg | SUPFAM:SSF49764 | UniParc:UPI000296E2DD | UniProt:M0RIT9 | MapMan:35.1 |
Description
Putative Small heat shock protein, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G16640_001]
Coordinates
chr10:-:24101705..24103720
Molecular Weight (calculated)
21951.3 Da
IEP (calculated)
7.661
GRAVY (calculated)
-0.739
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPDGRDSLD HLQRAGKVRQ QQEPQRHAPK RGVAPSAPLG LWDRFPTART VQQMMETMER IMDDPLGYSV TSSPSLGGEE FGGGYRRGRT PWEIKEGEGV
101: YKMRFDMPGM TKNDVKVWVE ERMLVIKAEK LPKEIKEGEE EEWSAKSYGR YNSRIALPDT IDLEKIKAEV KDGVLYVTIP KASPSSKVVD ISVQ
101: YKMRFDMPGM TKNDVKVWVE ERMLVIKAEK LPKEIKEGEE EEWSAKSYGR YNSRIALPDT IDLEKIKAEV KDGVLYVTIP KASPSSKVVD ISVQ
001: MASTLSFAAS ALCSPLAPSP SVSSKSATPF SVSFPRKIPS RIRAQDQREN SIDVVQQGQQ KGNQGSSVEK RPQQRLTMDV SPFGLLDPLS PMRTMRQMLD
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ
101: TMDRMFEDTM PVSGRNRGGS GVSEIRAPWD IKEEEHEIKM RFDMPGLSKE DVKISVEDNV LVIKGEQKKE DSDDSWSGRS VSSYGTRLQL PDNCEKDKIK
201: AELKNGVLFI TIPKTKVERK VIDVQIQ
Arabidopsis Description
HSP21HSP21 [Source:UniProtKB/TrEMBL;Acc:A0A178UVU5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.